Gene detail

Detailed information of HSymV2.0_g14.24878_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_14:19243487...19264376
NR annotation: XP_047122502.1, scm-like with four MBT domains protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HSymV2.0_g14.24878_t1

ATGGTCGAAGACTCATCCGCAAGTATAAAAAACCAAACTGGTAAAATAAAAAGCTCGTTGGTCTGCAAAGATGTACAATTAATTGAAAGTAAAAAGACATTGCATGCTAATGGAAAGTTTAAAACAATTCCAGATGCCATTACATGGAATGAATCTGGAAAGAAAATAAAGAGACGGTTAGAAGATCATTTGCCCAACGATAATAAGAAACCTAAAACTGACAACGATGATACTGTGGAATTACTAGATGAACTTAAAGAAGAAGTATTTAATTGGGAAAAGTATATAGAAGACACAGGCTCGAGAGAAGTGCCAAGTTCTGTTTTTAAACATGTTGTACCAGAGTGTATGTGTGGATTTGAACCTGGTATGAAGCTTGAAGTGCCAAACAAAGACTACAGGAATACATACTGGCTAGCAACCATCATTACCAAAGCTCCACCATTAATATTAGTTCGATACGAAGGTTTTCAACAATGCAATAATGCCGACTTTTGGTGTAATACGCTGTCTGATGATCTGCATCCAGTGGGTTGGTGTGCACGAACTAAACATGCTTTAAAGCCACCAAAGTCAATCCAACACAAAGAGAAGAACTGGTATGCTTATCTTATCAAACACTTAACTGGAGCAAGAAAGGCATCAGAATCATTATTTTTAAAAAAATCACACCCTGCACACTACCTTCGCGCTGGTCAATACGTTGAAGTATTAGATGCATATAACCCCACCTGTTATTGGCTGGCAAGAATTGTGGAAGTCTTCTCTGGCCGATTAAATTTGCAGTATGAAGGTTTGGAAGAAAAAAAAACTGAATTGTGGTGTTATTATTTGAACGAGAATCTGAGACCGGTCGGGTATGGAATCAAACATGGATTAACATTATACCCTCCGCAAGGTTATTTTACATTTACTCATGCTCAATTTAGCCGCATCACTGAGAAATTACTTTCTTTGTCAAAAAGAACTGATAATTCTTTATTTAAAGCATTATTTGTGGGCTGGCCGAACAAGATAGAGCATAATCTACGTTTGGGCATGAAACTTGAAGCCCTCCATCCCAACGACCCAACATCCATATATGTCGCCTCTGTGGCACGTATTTTCGACAACTATTATTTTCTTGTGAAAGTAGATAATCTTTTGTCGACACAAGATGATTTGATTTTGAACTCTTTCGTGGCACATAGAAACTCACCTTGCATTTTTCCCATTGGTTTTTGCACACGGAACGGTGTCACATTGCACCAACCAAAAGGTTACATTGGGAAATTTACCTGGGATGGATATTTAAAGTATACAAAGTCAGAACCCATTCCTGAgtcattttttgcacagATATATGACGATGTAAAGCTAGAAGTGGGAATGAAGTTGGAAGCTGTTGATAAAGAAAACAGAGGAAATATATGCGTCAGTACTATTTCAAAAGTAGTTGGACGCCATATTTGGTTGAACATTGATGGTGATACGCGCAGTGATCAGGTGTTTCATGTTGATTCGCATGACATTTTTCCTGTTGGATGGTGTGAAGCAACCGGACATGAACTGCAATGGCCAAGACCAAACACTTTGGAACAGAAGAATCGAATATCAAGTTTAAGACACACTGCTACGCGTAAAAATCGTCTCGAAGTTTTACGTAAGGGAAAATTACACGACAAAAGCTCCGACGCGAAAGATTCAAAGAAAGATAAACCAAAAGAAAAACGGCAAAAGTCGCGTCACTATTTAAAAGGTCGTCGTGGGGTTTCAAGAAACCGAGTGACGTACGATGACAAAAACGATACGACAACCGACACGTCAATTGCAATCGTTTGTATAAATCGACTCGCTGAAGAGTACAACTCAGAAGAGAGTATTAAACGTCATTTCCATCTTGACGCCGACGGACGTCTTCCGGCTGAAGTTGTAACTATTGACGATGACGACGATGATGTGGATAAATCTAAAACAGAAGACAATGATCCGTGTAAATACTCGGCAGCAGATTTAAGTTTTTTAAGTTTTATTCGCGTCAAACCAAACGATCTTAGTAAAAAGGAAGATGAAATGTTTGAGAAAAACCTTCACGACAACGACGGCAACCAAGGGAGCGATGTCGACTATTTACTGTCGCCAAACTCAAGTCGCGAAAGGCGTTCACTGAACAGTGTTGTTGCTATGCTTCGTGCTACTCGCCGTTCGCAGACCAAATCTCATTTGCTTGATCAATACAAGCAAAGCAAATCCAAAAAAACTGAACAACCAAGTCAGTCTATTAATCGAGAGAAGCCGCATAAACAGGATGCTGCCAAAACTGTGATTGATCTATGTGATGATATGGGAGACGACGAGGAAAGCACACTCATTGTCGATACGAAAGTTGCCACTCAAGATAACTCCATAAAAATTCCCGGCAAGGGCGATTACCGTATTGTGGAAAAAATCGTGACAAAGCGAGGCGATAAAAGTAAAATTATCCTTAAGCTGGGCAAAGCGTTACAAACTGACCATGTATTTACTCCAAATCGGCCAACAAATTCACAAACGGCCAACATGGCTGCCACTAATGTGGAAGACATGCATACGTTGTCCAACATGGCACGCTCGCACCCAGGACTGGACGAGATAATGAGACATCGTTTCGTTAAAGTACGAAACATCTGCAAAGATTTACCCAAAAATCCATTAGTTTGGACTAAAAAACACGTTGCATCTTTTATCACGACGGCTGGGGAAGAGAAGTATGCCAAGCTGTTCTACGATCAGGAGGTTGACGGCCATTCTCTTCTTTTACTCACCGTGCAGGAGATCCACCACATTCTCGGCGTGCATCTCGGAAACGCAATGAAAATTCATGATTACATATTTACGTTACAACAACTTGTCAATGACGCCTATCTGAACAATCACGTCAAACAAGCAGGTTCCATGGAAACGCCGCACGACACCGACTCTATTATTCTAGAAAGAGAAACAACATCAAATAGCTCAAAGGAGGAGAAGGTTACAACTGCGGAAATTTCTGAGACTTGCACCATGTTCCCGAAAATGGATGTCATTCATTGGATAAAAACGTCCGTTATACCGGAAAATGAGAAACGTGAAGTGGTGTCTACGACAGATATGCAACAGACTTATTCAGAAACTACGAAAACTGAATCGGTTCAAAAGACCGCTTCTGTTATATCTAAAGGGTTAGAAGTCGAACCTCGAAATATCACGCAAAAAGAAGATAGTAAAAACTGCGCATTACCGGTAGAAAATTTCAATCCGGTCCAGATGATCCCAGTTAGTGAATTTAATTTCATGCCGGCGTATAACATCCCCGGTCATGCAGTACGTGTTGCTTCTCCGCCGGTGCAGATGTCAGCTACTTTTACTACTCCTGTTCATATGATGCAATACAGACCGGCGAATATTCCGGTTGGCTCTGAATTTCCGATAAGATTCGGCACACATTTAATACCTCTTCATTATTTACCAGAACAGGCAAAAGAAACTGTTACCCCGGTGTCTAAACCGAACGAAACACTAGTTCCGGCGACCTCAATTCAACCAATCATCATACCACACATTCCCAATACGCTTAAAAGGCCAGCCGAGGTAATGTATCCGGTCCCATTTCATTTTCCGCTACAGTCAAAGGACTGTAAAAAAGACAATACCGCTTCGCGTAAAGCAAAGATACGTAAAACAAACATGGCGGGTAAGTCAATAATGGCAAGTCCGGTGTCCATTCCGCCTCCTTCGTTTTCACCGGACCATCCTTGGTTTCAGTCATATTTAAGGAAGGTGGATATGAAGTTAGAGTCAAAAGAGTTGTGGGACGATTTTTATAAGAATGGAACGGAAATGATTTTAACCCGTATTGGAAGACGTATGTTCCCAACGTTACAAATTCACGTCACGGGTATGGATCCAAAAGCGTCATACGTTATCATTGTAGACTTTTCTCCCGCAGATCACTATCGTTATAAATACGAATATGAATCTTCGCAGTGGTTAATCGCTTGCAAAGAAACTACGCCCACCCCAGGGAGAGTGTATGTACATCCAGAATCTCCCGCAACTGGGGAGGAGTGGATGAGAAATACGATTGATTTTACACGCTGCAAATTAACCAATAATATTAGAGATAAAAGAGGACACATACTTATGCAATCTATGCACAAATACCAGCCTCGTATTCATATCATCTATTGGAACGGGGCTCTTCCTTTACATATTGATCCAATTGAATTGTTACGAATCGGATGTCGAAAAGAATTCGTCTTCCTTCAAACACAGTTTATTGCGGTGACAGCATATCAAAACAGTCAGATAACACAATTAAAAATCGCAAGCAATCCCTTTGCACGTGGTTTTCGAGGAGACTGGCGAAAAGTTTCTAGTTCGGATGAAAAATCGAAAATAGAAAGCGAGCAATCCACCACAAAGAATTCCAAAAACTCTGACCAGCAGGAGAGTGAATCTAGTGATAAAATAATACCAAAGGAGGAAATCCTCTCagaggaagaagaagaagaggaagaagacgtattagacaacgaagacaaaaaagaagaGCTGAGTGAGACAAAAAATAAAGTTTGA

Transcript

HSymV2.0_g14.24878_t1

AAAAGTATGGTCGAAGACTCATCCGCAAGTATAAAAAACCAAACTGGTAAAATAAAAAGCTCGTTGGTCTGCAAAGATGTACAATTAATTGAAAGTAAAAAGACATTGCATGCTAATGGAAAGTTTAAAACAATTCCAGATGCCATTACATGGAATGAATCTGGAAAGAAAATAAAGAGACGGTTAGAAGATCATTTGCCCAACGATAATAAGAAACCTAAAACTGACAACGATGATACTGTGGAATTACTAGATGAACTTAAAGAAGAAGTATTTAATTGGGAAAAGTATATAGAAGACACAGGCTCGAGAGAAGTGCCAAGTTCTGTTTTTAAACATGTTGTACCAGAGTGTATGTGTGGATTTGAACCTGGTATGAAGCTTGAAGTGCCAAACAAAGACTACAGGAATACATACTGGCTAGCAACCATCATTACCAAAGCTCCACCATTAATATTAGTTCGATACGAAGGTTTTCAACAATGCAATAATGCCGACTTTTGGTGTAATACGCTGTCTGATGATCTGCATCCAGTGGGTTGGTGTGCACGAACTAAACATGCTTTAAAGCCACCAAAGTCAATCCAACACAAAGAGAAGAACTGGTATGCTTATCTTATCAAACACTTAACTGGAGCAAGAAAGGCATCAGAATCATTATTTTTAAAAAAATCACACCCTGCACACTACCTTCGCGCTGGTCAATACGTTGAAGTATTAGATGCATATAACCCCACCTGTTATTGGCTGGCAAGAATTGTGGAAGTCTTCTCTGGCCGATTAAATTTGCAGTATGAAGGTTTGGAAGAAAAAAAAACTGAATTGTGGTGTTATTATTTGAACGAGAATCTGAGACCGGTCGGGTATGGAATCAAACATGGATTAACATTATACCCTCCGCAAGGTTATTTTACATTTACTCATGCTCAATTTAGCCGCATCACTGAGAAATTACTTTCTTTGTCAAAAAGAACTGATAATTCTTTATTTAAAGCATTATTTGTGGGCTGGCCGAACAAGATAGAGCATAATCTACGTTTGGGCATGAAACTTGAAGCCCTCCATCCCAACGACCCAACATCCATATATGTCGCCTCTGTGGCACGTATTTTCGACAACTATTATTTTCTTGTGAAAGTAGATAATCTTTTGTCGACACAAGATGATTTGATTTTGAACTCTTTCGTGGCACATAGAAACTCACCTTGCATTTTTCCCATTGGTTTTTGCACACGGAACGGTGTCACATTGCACCAACCAAAAGGTTACATTGGGAAATTTACCTGGGATGGATATTTAAAGTATACAAAGTCAGAACCCATTCCTGAgtcattttttgcacagATATATGACGATGTAAAGCTAGAAGTGGGAATGAAGTTGGAAGCTGTTGATAAAGAAAACAGAGGAAATATATGCGTCAGTACTATTTCAAAAGTAGTTGGACGCCATATTTGGTTGAACATTGATGGTGATACGCGCAGTGATCAGGTGTTTCATGTTGATTCGCATGACATTTTTCCTGTTGGATGGTGTGAAGCAACCGGACATGAACTGCAATGGCCAAGACCAAACACTTTGGAACAGAAGAATCGAATATCAAGTTTAAGACACACTGCTACGCGTAAAAATCGTCTCGAAGTTTTACGTAAGGGAAAATTACACGACAAAAGCTCCGACGCGAAAGATTCAAAGAAAGATAAACCAAAAGAAAAACGGCAAAAGTCGCGTCACTATTTAAAAGGTCGTCGTGGGGTTTCAAGAAACCGAGTGACGTACGATGACAAAAACGATACGACAACCGACACGTCAATTGCAATCGTTTGTATAAATCGACTCGCTGAAGAGTACAACTCAGAAGAGAGTATTAAACGTCATTTCCATCTTGACGCCGACGGACGTCTTCCGGCTGAAGTTGTAACTATTGACGATGACGACGATGATGTGGATAAATCTAAAACAGAAGACAATGATCCGTGTAAATACTCGGCAGCAGATTTAAGTTTTTTAAGTTTTATTCGCGTCAAACCAAACGATCTTAGTAAAAAGGAAGATGAAATGTTTGAGAAAAACCTTCACGACAACGACGGCAACCAAGGGAGCGATGTCGACTATTTACTGTCGCCAAACTCAAGTCGCGAAAGGCGTTCACTGAACAGTGTTGTTGCTATGCTTCGTGCTACTCGCCGTTCGCAGACCAAATCTCATTTGCTTGATCAATACAAGCAAAGCAAATCCAAAAAAACTGAACAACCAAGTCAGTCTATTAATCGAGAGAAGCCGCATAAACAGGATGCTGCCAAAACTGTGATTGATCTATGTGATGATATGGGAGACGACGAGGAAAGCACACTCATTGTCGATACGAAAGTTGCCACTCAAGATAACTCCATAAAAATTCCCGGCAAGGGCGATTACCGTATTGTGGAAAAAATCGTGACAAAGCGAGGCGATAAAAGTAAAATTATCCTTAAGCTGGGCAAAGCGTTACAAACTGACCATGTATTTACTCCAAATCGGCCAACAAATTCACAAACGGCCAACATGGCTGCCACTAATGTGGAAGACATGCATACGTTGTCCAACATGGCACGCTCGCACCCAGGACTGGACGAGATAATGAGACATCGTTTCGTTAAAGTACGAAACATCTGCAAAGATTTACCCAAAAATCCATTAGTTTGGACTAAAAAACACGTTGCATCTTTTATCACGACGGCTGGGGAAGAGAAGTATGCCAAGCTGTTCTACGATCAGGAGGTTGACGGCCATTCTCTTCTTTTACTCACCGTGCAGGAGATCCACCACATTCTCGGCGTGCATCTCGGAAACGCAATGAAAATTCATGATTACATATTTACGTTACAACAACTTGTCAATGACGCCTATCTGAACAATCACGTCAAACAAGCAGGTTCCATGGAAACGCCGCACGACACCGACTCTATTATTCTAGAAAGAGAAACAACATCAAATAGCTCAAAGGAGGAGAAGGTTACAACTGCGGAAATTTCTGAGACTTGCACCATGTTCCCGAAAATGGATGTCATTCATTGGATAAAAACGTCCGTTATACCGGAAAATGAGAAACGTGAAGTGGTGTCTACGACAGATATGCAACAGACTTATTCAGAAACTACGAAAACTGAATCGGTTCAAAAGACCGCTTCTGTTATATCTAAAGGGTTAGAAGTCGAACCTCGAAATATCACGCAAAAAGAAGATAGTAAAAACTGCGCATTACCGGTAGAAAATTTCAATCCGGTCCAGATGATCCCAGTTAGTGAATTTAATTTCATGCCGGCGTATAACATCCCCGGTCATGCAGTACGTGTTGCTTCTCCGCCGGTGCAGATGTCAGCTACTTTTACTACTCCTGTTCATATGATGCAATACAGACCGGCGAATATTCCGGTTGGCTCTGAATTTCCGATAAGATTCGGCACACATTTAATACCTCTTCATTATTTACCAGAACAGGCAAAAGAAACTGTTACCCCGGTGTCTAAACCGAACGAAACACTAGTTCCGGCGACCTCAATTCAACCAATCATCATACCACACATTCCCAATACGCTTAAAAGGCCAGCCGAGGTAATGTATCCGGTCCCATTTCATTTTCCGCTACAGTCAAAGGACTGTAAAAAAGACAATACCGCTTCGCGTAAAGCAAAGATACGTAAAACAAACATGGCGGGTAAGTCAATAATGGCAAGTCCGGTGTCCATTCCGCCTCCTTCGTTTTCACCGGACCATCCTTGGTTTCAGTCATATTTAAGGAAGGTGGATATGAAGTTAGAGTCAAAAGAGTTGTGGGACGATTTTTATAAGAATGGAACGGAAATGATTTTAACCCGTATTGGAAGACGTATGTTCCCAACGTTACAAATTCACGTCACGGGTATGGATCCAAAAGCGTCATACGTTATCATTGTAGACTTTTCTCCCGCAGATCACTATCGTTATAAATACGAATATGAATCTTCGCAGTGGTTAATCGCTTGCAAAGAAACTACGCCCACCCCAGGGAGAGTGTATGTACATCCAGAATCTCCCGCAACTGGGGAGGAGTGGATGAGAAATACGATTGATTTTACACGCTGCAAATTAACCAATAATATTAGAGATAAAAGAGGACACATACTTATGCAATCTATGCACAAATACCAGCCTCGTATTCATATCATCTATTGGAACGGGGCTCTTCCTTTACATATTGATCCAATTGAATTGTTACGAATCGGATGTCGAAAAGAATTCGTCTTCCTTCAAACACAGTTTATTGCGGTGACAGCATATCAAAACAGTCAGATAACACAATTAAAAATCGCAAGCAATCCCTTTGCACGTGGTTTTCGAGGAGACTGGCGAAAAGTTTCTAGTTCGGATGAAAAATCGAAAATAGAAAGCGAGCAATCCACCACAAAGAATTCCAAAAACTCTGACCAGCAGGAGAGTGAATCTAGTGATAAAATAATACCAAAGGAGGAAATCCTCTCagaggaagaagaagaagaggaagaagacgtattagacaacgaagacaaaaaagaagaGCTGAGTGAGACAAAAAATAAAGTTTGATATTTTGTGAGTCGAAGTATTAGATGTCGATTCTTCACAAATGTCCCTACACTATTTCAAACAAATAAGCGAGACAAATTTTCGCCAATCATTTTTTCGAGGTTTTAAGTGGATTAACTCAGTTCAATTGGAATTTAAATATATACCCCGTTCAAAGCATAGCGAAAAAGGAAAAAACTCGCGGAAACTTCTCCGTATATTTGTTTTGAATAAATTAGTCGTAGTTTTGGTACTACTATTAGGTAATTAAAATTTAGAATCCGCAAAAATCCGACAAATTATAATGTAAACTCGATAAAAAAGAAAGTCACTCGCCGTCAATCCTGACAAGTTATTACGCGTAAAATCTACTTAACGTAAAAATGACTTTCAAAATTTAAGCAATTCGTTTCGTCAATATTTCTTCTTAAAGTGGGTATTGATTTTAGCCTCGAGGGTAGTGACTTTTTAACAATACGATCAGTATTGTAACGAGAAATTCAGAAGTTACCAAAGTAAAAAATTTAACAGAGTTCCAGTTCTAAGTCCGATATGGAACTGGAATTCCGATGAACAGTACTTGTTATTTTTTTTTCTGACAGAAAACTACACCACCATTTTTAGAACCTAAGATGTGCTTTCATTTTTAATATTTTTATAGTTTTCTTGTGTTTGCGGATAACTTTTCTTATATCCATGTTTATACTGTCCTTTTTTTGTCTTGGGTTTCTTGCCTCCTACCGGCATCGAGGCTTTGGCTTTAAAATGTTTAAATAATATTTTTCTTTTTAAAAGCATACGTTTTAACAATAGCTTCAACATCATctgcatgttatgtttgtaaacatataacttaaaaacatacccagggtcagataggggaattttttaagcatgtgctaagtatattacttagccttgctgagtccatgatgtgtgtggattttctggtgttatgagtattttaattagacgtattctattttatataaataaataaacaccactacacttcactatctcgatctttttaagctaaaaacagcaccgttttattttacttcacatggcttatcattctaccttaaaaagtttataatttgtttttccaatatgcaAGCACCCCTAAATAAAAACAAAACAGATTTAAAAAGTGTGCAAATGAAAACATATAGCCTGGCGTGAAATTTAAACGTTCTTATAAAAAGGTGTGTCGTGCAAGGTAAGAGGCTATTTCAAGTTGTAGTTTTTTAGAACGCTCGAAAAATGTCACAACTCTACCCCAGGTCTAACTTTTTTTACCTTAttttt

Protein

Uniprot

Gene family

Uniprot term	Description
Q5DTW2	Scm-like with four MBT domains protein 2 OS=Mus musculus OX=10090 GN=Sfmbt2 PE=1 SV=2
Q5VUG0	Scm-like with four MBT domains protein 2 OS=Homo sapiens OX=9606 GN=SFMBT2 PE=1 SV=1
Q9JMD1	Scm-like with four MBT domains protein 1 OS=Mus musculus OX=10090 GN=Sfmbt1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02820	MBT	mbt repeat	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR004092	Repeat	Mbt repeat	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan