Gene detail

Detailed information of KAF0987519.1 in Henneguya salminicola

Genomic Location: SGJC01004231.1:2485...5436
NR annotation: KAF0987519.1, hypothetical protein HZS_1477, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAF0987519.1

ATGTACACTAATCTCCAAACATCATTGCCATATTTTAGCGTGGTGTCATCTTCAAAATATAAATTATATGGAATTTATGGTTTTCGCGGCTTTTCAAATCGAACCAATATTTTTTTTAAATTGATAATTATCAACAATGAGCGCGTGTGCCAGGAATTAAAATTGAATCAATATTCGAATAATTCATTGAGCATGTCAGATTCAAGAGCATCAACTGAATATTTCTGTGATAATTGGAAGAGACCAAATGTACCACTTATAATAGAATCTCAACAAGACCTAATATTTCAAGCAATTGACATCGATTATTATAATGGTGACGTTCCCGCCAATATTCAAACAAACTACCGCCAGTATGGATCAATACTTCGGTTATATGGCGTTTGTTCTAATGGCAATACAATGCTAGTTCATTGTTATGGGTTTCGACCCTATTTCTATATTGAAGCTCCACCTTCGATCGATGAAGAATACGTGATAGGACTTAAAAATAGTTTAAATAAAGCATTAATAGATGAATTCAAACAAAATTCGGCGTTTAAAACGGCAATCTTGGATATTTATGTTGAAAATAAAACGAATTTATACGGGTTTTCTTCTAATAACCCTAAACCTTTTCTTAAAATAATACTTGCTACTCCTTCATTTATTGCGGCTGCGCGCAGATTATTGGAAAAAGGTATAGAAGATACAGTCGCATCAAAACTCTATACATTTCCTCAGACTTTTGAGACAAATATTGATTTTGAGATTCGATTCATGGTTGATTTAAACATGTCTGGATGTAATTGGATCAGTCTTATAGCGGGAAAATATTTTATTCGCACATCTAATGTGGAAAGTAATTGCCAGATTGAGGTTAACGTACCCTGGGAAGCAGCAACAGCGTTGAGTTCTGAAGGAAAATGGGACTCAATAGCACCCTATAGAATTCTAAGTTATGATATTGAGTGTTTGGGTAGACGAGGGATTTTTCCTGAGGCTCGTATTGATTCGGTTATACAAATAGCTAATACAATAACAATTTACGGCATTGAAAATAAGTATATTAAAGTTATTTTTACGGTTGGATCTTGTGCTCCAATAGTAGGGGCTAGAGTTGTAAGTTTTAAGAATGAGTCAGAAATGTTAAAAGCTTGGGCTAATTTTGTGATAGAGGTTGATCCAGATATTATAACAGGCTATAATATTTTTAATTTTGACACACCGTACTTGATAGACCGAGCAACGCATTTGAAGGTTTATGAGCTTTTACACATGGGTCGTATTAAATCGGAAACGTCTAAAGTAAAATCAGCTTTTTTTCAAAACAAAGCGTTTGGTAAGAGAGAAAATAAATCAGTGAATATATCAGGTAGATTACAGCTTGATGTTTTTCAAATTTTGATTCGAGAACACAAACTTAGATCATATACACTTAATAATGTGAGTTTTCATTTCTTGGGTGAACAAAAAGAGGATGTACAATATTCAATTATCAATGATTTACAAAATGGCGATGAACATACTCGTCGTAGATTAGCTGTATACTGTTTAAAAGACTCGTATTTACCTATAAAAATACTTGAAAAATTAATGATAATAACTAATCATATCGAGATGTCTCGTGTTACGGGTGTACCTATAAATTGTCTTTTAACCAGGGGTCAACAAATTAAAGTCATGTCACAATTGCTAAGACAGTGTAAAATAGAGAATCTTATCATTCCTCATGTTAATTCCACACCCACAGAAGAGTTTGAAGGTGCCACTGTTATAGAACCCTGTAAAGGATATTATGACGTACCTATTGCTACCCTTGATTTTGTTTCACTATATCCTTCTATAATGATCTCACATAACTTGTGCTATTCCACTCTTCTTTTTCCAATTCAAGCAAAAACTATGAACCCCCACGATTACACTGTTACACCATGTGGTAGCTATTTTGTCAAAAGTCATATTCGAAAAGGAATTCTTCCTTCTATTCTTCAGAATCTGTTGGAAGCGCGTAAATATGCCAAAGCTTTATTGAAAACTGAAAAAGATCCTTCTAAACGTAAAGTCTATGATGGACGTCAATTAGCTATAAAAATAAGTGCTAATTCAGTTTATGGGTTCACAGGTGCTCAAGTAGGCAAGCTTCCATGCTTAGAAATATCTAGTAGCGTTACAGCCTATGGACGTACTATGATCGAACAGGCTAAAAAAATAATCGAACAAAATTATTGTACCTCAAAGGGGTATCAATTCAATGCGAAAGTTATTTATGGAGATACTGATAGTGTAATGGTTAAATTTGGTGTATCTTCACTTGAGCAAACAATGGATTATGGTAGAGAGGCTGCAGGATTTATTTCCTCCCAATTTCCCGACCCCATTAAACTTGAATTTGAAAAAGCCTACTTTCCATATCTTCTAATAAACAAAAAACGTTATGCTGGTTTGCTATATACTAATCCGATTAAATACGATAAAATTGATTGCAAAGGAATTGAAACAGTTCGAAGAGATAATTGCCTTTTGGTTGCTAATTTAATAAGTTCTTGTCTTTATAAAATTTTGATTGAAAGAGATCCCAAAGGAGCCATTAAATCTGCTTTTGAATCCATTTCTGATTTACTTATGAATAAAATAGATATTTCTTTATTAATTATTTCAAAAGAGCTTCGAAAAACTGGGGAAGATTATACAAACAAGCAGCCACATTCTGAATTAGCTGAACGTATGAAAAAAAGAGATCCTGGATCTGCACCAAAATTAGGTGATCGTGTTCCATTTGTATATATAATGGGAGCAAAAAAAGATCGAGCATATGAGAAAGCTGAAGATCCCATATAT

Transcript

Protein

Uniprot

Uniprot term	Description
P52431	DNA polymerase delta catalytic subunit OS=Mus musculus OX=10090 GN=Pold1 PE=1 SV=2
P97283	DNA polymerase delta catalytic subunit OS=Mesocricetus auratus OX=10036 GN=POLD1 PE=2 SV=1
P54358	DNA polymerase delta catalytic subunit OS=Drosophila melanogaster OX=7227 GN=PolD1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR042087	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR050240	Family	DNA polymerase type-B	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10322	DNA POLYMERASE CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006287	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0043625	Cellular Component	delta DNA polymerase complex	Interproscan
GO:0045004	Biological Process	DNA replication proofreading	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18964	UL30, UL54, BALF5, U38; Herpesviridae DNA polymerase catalytic subunit	EC:2.7.7.7	Viral proteins	ko03200	deepkoala