Gene detail

Detailed information of KAF0989224.1 in Henneguya salminicola

Genomic Location: SGJC01002255.1:826...3386
NR annotation: KAF0989224.1, hypothetical protein HZS_6410, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAF0989224.1

ATGAATAAAGAACTTTGCATAATTTATACGATTCAATTTTTTTTTACAAAAGTCAGACATATTCGGATATCATCGACTAAAATGGCGTGCAATGGCAACGAGGATGAAGAAATCATAAATTATATACATGAATTTTCTAAACGAGATGTTAAATCGTTAAATCGTAGTGAATACGTTCAAAAAATTATTACTCACATTAAACAAGAAAAGCCAATATTTATAAAATCGGATTATGTTCATCTAAAAAAAATTTGCATGGAGGAGGTCAAAAAACTGATTGAGGATCAAAAAATTAAATTTGAACCCATAAATTTTTTAAAACAAAAAATTGGTAGCCGAAGCTTAAATCGCTCACAAAAACGAAAAATAACACTCGATAAAATAGATCGTTCCGTGGAAAAATCAAAGGAAACGCCCACCTATGTCCCGGCAAACCGCCCGCCAGCAATGGCGTCTGCTCAACTCTTATTTTTAGCAAATAACATGACATTATCTGATTTAGCCATAAAACAAGAGAATTTAGACTTGATCAGACGCGTTGTGTTTTATTTGCGATCCCCTGATTTATTTAAAAACTGTATCTTGGCGCCGTGTGTAGGAGCTATAGTTCACGGCTTTCCAGGCTCAGGCAAAACCCAGCTGGTCAAAGCTATATCAGGAGAATATAACATTTCTATCTATAAAATACCAGCCATAGATTTAATAAGTGATTTCAAACAAACAAGTGAGGCTAAAATAAAAAATCTATTCAATGACATATACAATCATGAGCCCTCAATTTTGCTCATCGATGATATAGATGCTATCTTTACTGCATCTTCTGATCTTTCCTCCTTAGCCAGAATGGAAGAACGCCGACTTGTAGCACAATTGTGTGAATGCATGGACGGTATAAATAATTCTCACCACATATTAGAAACGTCTGCAAAACATCCAGGCATTTTAGTTTTTATGACTACCTCAAATATTGGAGTAATAGATTCATCCTTAAGGCGCCCTGGCCGATTTGAGTACGAAATTGGTATCTCCATGCCGGATGAAAGGATTAGATTAGAAATGCTTAAAATCATGACTAAAAGCTTTAATTTAGATTCTTCAGTAAATTTTGAAAATATTGCTCGTCTTACACCTGGATATGTAGCCAGTGATCTGGTTTCTTGTGTTCGTGAGGCAACAATGCTTTCAATAGAAAGAATCAATAGCGACAATATTTTTAATGAGGTTATCTTCTATCGTCAAATATCTAGGGTGAAAGGAGCTATAAAAATAGTCAAACCATCATCTACGAGAGAGGGGTTTTCTATGCTACGAGATATCACATGGGAGGATGTAGGTGGGATGGATATAATTAAAAGTCATCTTCATTTGTGTATAACGGGCCCAATTGTTCACCCACAAATTTTTAATAATCTTGGACTTCATGCATCGACTGGGATTCTTTTGGTTGGTCCTCCCGGATGTGTTCGTGGTCCAGAACTGATTAGTTCATACGTTGGTGAGAGCGAAAGGGCGGTCCGAAATCTCTTCTCTCGAGCTCAAATTGCCGAACCCTGTGTGATATTTTTTGACGAAATAGATTCATTGTGCCCTAAACGCTCGCATGATCCTAATGTATTGATTGCTATAATTATAGAACAATTCAAGTTCACGGTTAACATTATTGATTCTGCCATTTTAAGAAAAGGACGATTTGATAGAATCTTTTATATTGGCTTACCAACACCGTCTGAACGCCTTTCAATCCTTAGAACATTAACTAAAGTAATAGATTGTCTTATATCCAAGAACGGTACCCGTCCTTTATTATCAGAGGATGTGGATTTAGAGAAAATTGCCCTGGATTCTCGATGTACTCGTTTTTCGGGGGCTGATTTAGCATCTCTTGTCCGTGAGTCGTCAATGTCAGCATTTCGGTCATATCTCGATCGAAATGGTTCTAGCTCGGAAGCATCTATTACTGTTAAAGCTGAACATTTTGAAGATACTTTATCATTTCTTAAACCCTCATTGTCTGAAACT

Transcript

Protein

Uniprot

Uniprot term	Description
Q9SS94	Cell division control protein 48 homolog C OS=Arabidopsis thaliana OX=3702 GN=CDC48C PE=2 SV=2
O14325	Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16E9.10c PE=1 SV=1
O28972	Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_1297 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0051973	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275	Molecular Function	preribosome binding	Interproscan