Gene detail

Detailed information of KAF0989325.1 in Henneguya salminicola

Genomic Location: SGJC01002174.1:2769...6419
NR annotation: KAF0989325.1, hypothetical protein HZS_4443 [Henneguya salminicola]
Species Henneguya salminicola · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAF0989325.1

ATGGCTAAAGATTCATCTCCTACTATAGCTCTTTCCGTATATATCCGAGCTAAATGTCATGAAAAAGTTGTTTTATGTTTTGCTGAAACCGGTCAATTCGATAGTATATTGAAATATGCAAAAAGGGCTGGTTATCAACCTAATTACGTTCGGGTTTTGCGCTTAATATTATATAAAAACCCAGACGGCGGTCTAGAATTTGCAAAATCTCTTCTTAATAACCCTGATATAGAAGCTTTGGATATAAACGCTCTCTCAAATTGTTTCATTGAAACGAATTTGAGCTCTCAATTTACCGCTTTTCTTTTAGAGGCTTTAAAAAATAATCTACCTGAGCAGGGAGACCTTCAAACAAAATTTCTTGAACAAAATATCCTATCAAATCCTCAAATTGTCGAACAAATTTTGGCAAGAAATATTTTCACTCATTTTGATAAGCCGCATATTGCAAGTCTCTGCGAAAAGGCAGGTCTCATTCAATGGGCACTTCAATTTTACAGCGATATCTATGATATTAAAAGAGTTATCGTTCAAACTCATCTCATTAATTCAGATTGGTTGGTTTCTTATTTTGGTTCTCTTTCAGTTCACGATAGTTTGTCTTGTCTTAAAGTGTTGATGGATGTTAATCGTCGACAGAATTTACAAATAGTTGTCCAAGTCGCTGTTAAATACCACGAACAACTAGGTGCTCCAGCTTTGATACAATTATTTGAAACTTCTAAATGTTTCGAGGGCCTCTTTATGTTTCTCAGTACTATTGTTAACTCAAGTCAAGATCCAGAGGTTCATTTTAAATACATTCAAGCTGCGTGTAAAACTAATCAATTAAAAGAGGTCGAACGTATTTGTAAAGAAAGTAATTATTACGATCCAGAAAAAGTAAAAAATCTTCTTAAAGAATACAAATTATCCGACCAAATTCCTTTAATCATTGTCTGTGATCGATTTAATTTCGTTGAAGATCTTGTTCTTCATCTTCATAAACATAATCTTCTTAAATACATTGAAATATATGTTCATAAAGTGAATCCATCCAGATTACCTGAAATTGTAGGCGCTTTACTAGATGTAGATTGTCAAGAAGATTTTATTAAAAATATGATGATTGGATGTCCACCTGAATATTCTACAGTAAAACTCATTGAGGAAGTGAGTAGACGCAATCGCATTAAGCTTTTACGAAAGCTTGTTGAGAGTCGTATAAATTCAGGTAGTATCGAACCGGCAGTTCACAGCGCTCTAGCGATTGTTAATATTGATAGTAATACTAGACCAGAAGTTTTCTTGAAAGAAAATCCATATTATGACAGTCTGATTGTTGGTAAATATTGTGAAGATCGGAACCCAACTTTGTCCTGTTTAGCGTATGAAAAAGGGGGCAATGACGACGAGTTAATACGTGTCTGCACTGCAAATTCTTTATATAAAAATTTGTCTCGATATGTAATACTAAAGAAGAGTCAAGAACTATGGGCTAAAGTTCTTAATCCTGCCAATGATTACCGTCGCTCATTGATTGAACAAGCATCTCAATCGATACTTACGGAATCATACGAAGCCGAGTGTATATCCGAGATGGTTAAAGCATTAGTAGCAGCGAATTTACCAGACAAGCTTATCGATTTATTAGAAAAAATCGTTTTGGTAGATTCTCCTCACAGACATGTTCGAAATTTACAGAATCTTCTACTTTTAACATCGATCAGATCAGACCCTTCTCGTCTTTTAGATTATATTCAACGCTTGGATAATTATGATGCACCTAATATCGCGGATATGGCCATAAATCATAAATTATATGAAGAAGCTTTTGCTATTTATAAGAAATTTGAGGTTCACTCATCAGCAATTGCGGTTTTAACAAATCTAATTAAAAGTTTGGACCGCGCTTTTGAATATGCGGAAAGGTACAATATACCTGAAGCTTGGAGTATTCTTGGTCGTTCTCAATTGACTAATAATCAACCTAAAGAAGCAATTGAGTCGTTTCTTAAAGCTAATGATTTTTCTCAATATAATGAAGTAATTGCAGCTTCTTCTCTTTTTCCAATACATGAATCTATGATCAAATATCTGTCTTTGTGCCGCACAACTGTTAGAGATAGTTCTGTAGATTCTGGATATGCATATTGTTTGGCTTTTACTGGTCGATATGAACACCTTCAAGATTTTCTTAATCAGCCGCATAATGTTAACGTTAATGACACAGGAATCCGTCTTTTCGACGAGGAAAAATACGAAGGTGCTAAAATATTATTCAAATATTCTAACAATTTCTCTAAGCTTGCCGTTACACACGTCAAATTAAAAGAGTATCAATTTGCCGTTGAAATGGCACGCAAAGCAAACAAAACAAAAATGTGGAGAGTGGTGTGTATTGCTTGTTTAGATGCGGGAGAATACCGTTTTGCTCACATTTGCGCTCTAAGTCTTGTTATTCATCCCGAAGAATTAGAAAATCTTGTTCGATCATACGAAGAATTAGGTTTAGTTCAAGAACTTTTGCTTCTTATTGAGGCTTCAGTTAATTTAGAGCGTGCACATATGGGAGTATTCACTGAATTAGCTATCTTATATGCAAAATATAAACCAACCAAACTTAAAGACCATCTTGATCTATATTGGACAAGAATCAATATACCAAAAGTTCTTAAAAATTGTGAGAAATATAATCTATGGTCGGAACTAGTTTTTCTTTACGATAAATATGAAGAATATGACAACGCTATACGTACAATGATTCGGCATCCAGCTACAGCATTTAATGAGCCTCAATTTAGAGATATTATTCAAAAAGTTGCAAACCATGAGTTATATCAGGAATCTATTAATTTTTATTATGAATACAAACCTTTTATGTTAAATGATCTTTTAATAGTTTTAACACCTCGAATTGATCATTCTAAAATTATAAATCAATTAAAGTCTTTAAATATTATTCCTGCATGTAAAGGATATTTAATATATGCACAAAAATCTAATATGGCCGTAATTAATGAAGCTATTAATGATGTTTATGTTGAGGAAGAAGCTTATGATGATTTAAGACTCTCAGTTGAATCATTCAATAATTTCGATGCTGTTAAATTCGCTGATAAATTAGAACAACAACCTTCTGTTGAATTTCGTCGCATTGCTATCTTCATACGTAAATCATCAAATAGATGGAGTCAAACATTGGAAATGGCTAAAAAAGACGGTCTTTATGATGATGCAATTATTTATGCTGCAGAATCGAAAGATACAGATATGGCACAATCTTTATTGGACCATTTCATTGAAATAAATCGACCTGATTATGTTGTATCTCATCTTTATTTCTCTTATGATATTCTTAAACCTGACCAAGTTCTTGAATCATGTTGGCTTAATAATATGTCTCAATATTGTATGCCTTATATGATACAATATATGAAAGAATGTACTTCAAGACTCGATGCAGTTGAAACAAGACTTAAAAAAGACCCTGACACTGTTGAAGAACAATCAGTTATTTATCCTATTGGACATACACTTATGATAGGAGGATCTAACACATTTAGTGCACCAACTGGTGGTATAAATCCCCAAAATTTTGTTGGTCAACCACAACCACTGCACCCTTCTATGAATTCATTTACTCGTCCTCGCTTCAACCCCTTTTCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49951	Clathrin heavy chain 1 OS=Bos taurus OX=9913 GN=CLTC PE=1 SV=1
Q68FD5	Clathrin heavy chain 1 OS=Mus musculus OX=10090 GN=Cltc PE=1 SV=3
Q00610	Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005110 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR016341 all species →	Family	Clathrin, heavy chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10292 all species →	CLATHRIN HEAVY CHAIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0071439 all species →	Cellular Component	clathrin complex	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04646	CLTC; clathrin heavy chain	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.