Genomic Location: SGJC01001813.1:3257...4272
NR annotation: KAF0989775.1, hypothetical protein HZS_5302 [Henneguya salminicola]
| CDS |
| KAF0989775.1 |
| Transcript |
| - |
| Protein |
| KAF0989775.1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01138 | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036345 | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR027408 | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR050590 | Family | Exosome complex component Rrp42 subfamily | Interproscan |
| IPR020568 | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR001247 | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11097 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000176 | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000177 | Cellular Component | cytoplasmic exosome (RNase complex) | Interproscan |
| GO:0000467 | Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0016075 | Biological Process | rRNA catabolic process | Interproscan |
| GO:0017091 | Molecular Function | mRNA 3'-UTR AU-rich region binding | Interproscan |
| GO:0034427 | Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | Interproscan |
| GO:0034473 | Biological Process | U1 snRNA 3'-end processing | Interproscan |
| GO:0034475 | Biological Process | U4 snRNA 3'-end processing | Interproscan |
| GO:0034476 | Biological Process | U5 snRNA 3'-end processing | Interproscan |
| GO:0043928 | Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | Interproscan |
| GO:0071028 | Biological Process | nuclear mRNA surveillance | Interproscan |
| GO:0071035 | Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | Interproscan |
| GO:0071038 | Biological Process | TRAMP-dependent tRNA surveillance pathway | Interproscan |
| GO:0071042 | Biological Process | nuclear polyadenylation-dependent mRNA catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12586 | RRP43, EXOSC8, OIP2; exosome complex component RRP43 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
