Gene detail

Detailed information of KAF0989850.1 in Henneguya salminicola

Genomic Location: SGJC01001756.1:3681...6347
NR annotation: KAF0989850.1, hypothetical protein HZS_3244 [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAF0989850.1

ATGTTTTCTGTTAAATTGAAATTGCCAGTTAAAAAAACAGAGACAGTTGATTTAGAAAGATTTTTAATAAATTTTATTCGACATGAATATGGAGATGAGAAATTGGATGAACAAAAAAATTCAATCAAAGCTCTGAATAATTTAAGAAACTCAGCATTGTGTAGATCAACTGAAAAAGGGGCCCATGATTACAAATTAGTAGCAGAATACTATTTCTGCTTAAAAATACTCGAACCACTATTATCCTCAAAAGAAGGACAAGAATTTGTCGGCACGACATGGTATGAATGTTACCCGAAATCATTTTTTTCGTCAAATAAAAAATTTGATAATCGCCTTTCTTTTGAAATCGCCAATGTTTTGCATTTACTCGGAATTCTTTTATTTAAACAAATTGAGTGTCTGCCAACCGAAACGGAAGATGATTTAAAAATATATATTAAAATGTGTAACATATCGGCCGGAATATTCACTGAATTAAAAAAATATTCCGAAATTAGTAGCTTGGCAGCTATTATGGACGAATTATCGCCTGATTCATGCCAAGTTTTAACGGAAACATGTTTGTGCAATTCTCAATTAGCATTCGGAACTAAGTTTTCATCCAGTGCTCAAAATCTAAAACCGTATATACGAATCACGGTTCAAGCTCAATCAAGAATATCCCAAGCCCTTGAAATAATATCACGGAATGAAAAATCTCAATTTTTAAATTCTGTAAAAAGCGCTCTTACTCCTTTTAATCTTTATCTCCTTTGCTTGTTGCATAAATCACAATCATGCGTAGATGAACAAGAAGCAAAATATGGCGAAAAATTAGCCAATCTTAGAAAAGCGCTTGAAATATTTAATGAATACGAGAAAAATAATACCGATGCGCAAATTAAAAAAATGGGGCAGGATTTACGAAAACTAGTTTCCACTGCTGAACAAGAAAATGATTTAATTTATCATGCGGCTGTTCCAAAGGCTGTTTCATTGTGTTTCTTGAAGCCCCTAAAAATTGCAGAAATCGTGCCTCCTACACTCGAAAATCTATTAAATAAACAAGGATGCTCGATCGCTGAGAGTTTTAAATCACTGATACCTACAGCAGTACGAAATGCAAAAAAATTATATTTTACAAAACTATCTGAAATTCAGTCTAGGCTAACTGCGCACGTCCAACAATCAAATTCTATATTCTACTCGTTTCATATTTTATTTAACTGTAGCCTTTTTGCAGAGATGAATATTCCAGCATGCTTCGAAAAGGGGGATCTAAAAAGTTTACCGCCCTCTGTTGTCGAGAAAGTTCAAGAACTAGCCGCTTCGGGTGGCGTTCCTGCAGTAGAATCAAATTTTAAACTTCTTAATAAACTAACAAATAATTGCCGACTTGATTTGGACAGAGCTTGGGAATCTTTAAAACAAGAAGAAAACGAGGACACTCAGTATCGCCGAAATTATTCGTCACTATGGACTCGACCATCCTCGGCAGAAGCTTCTAAGTCATGGCGACAATCTCTACAACAATATGCTGATCATTTAAAAAATGCTGAAAATGCTGATAATTCGCTTTCACAGAAATTGAACGAGATTAAACCTTCTTTAGCTCTTTTAAGTCGTGGCGGACAAAATCTTGCAGATCTGAACAATCAAAAAAATTTGGCTATATCTCATTTAGGAGATAGTTTTTTAAATGAAATAAAAAAAATATATTATGCCTACAAAAAAATAGAAAAAGATCGCATAGATTGGCTTAATAAATTAAAACCTGATGATAAATCTGTTGAAACATTTTTTATCGATCATCTCAACAGTGATGGTACGCTAAATATCGAGCAGGACTGTCAAACACTCATTAATACACTGAATCCTATTGTGAGACAAATAGAGCATTCCATTAACGAGGAACAAACTCCCATTGTTCATTCTCTTATTTGCGCTAATGATCGCATCAAAGCCTTAGGGCAGCCAACTAATACATTAGATCAAGCTCTCAAAGATTATAACACATATATCCTTATACGAAATGGTATTAATGAAGGTTTTGAATTTTATAATAAATGCGCCAGCAATATAACTTCTCAGCTATCTAAAATAAACGACTTTTGCTACGCAAGACAAATTGAAGCTCAGGATATTATTGACCAAATTAAAAAATCACAAACACCATGTGCAACTTCACATTATTATTCTTCTAATCAAGCGACATATACTCAACCTCAACTTCCTTATTATTATAACCAATATGCGAGTGCGAGTCCTCAGCCTTCTAATTATTATCCAGCAGCTCCAAACACACTTCCACAATTCAGTTCTCATTCGCTTCATCGAGGCCAACGATAG

Transcript

Protein

Uniprot

Uniprot term	Description
F4HXZ1	Vacuolar-sorting protein BRO1 OS=Arabidopsis thaliana OX=3702 GN=BRO1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097	BRO1	BRO1-like domain	Repeat	Interproscan
PF13949	ALIX_LYPXL_bnd	ALIX V-shaped domain binding to HIV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045251	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan
IPR004328	Domain	BRO1 domain	Interproscan
IPR025304	Domain	ALIX V-shaped domain	Interproscan
IPR038499	Homologous_superfamily	BRO1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23030	PCD6 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005768	Cellular Component	endosome	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0071985	Biological Process	multivesicular body sorting pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12200	PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein	-	Exosome	ko04147	deepkoala