Gene detail

Detailed information of KAF0991752.1 in Henneguya salminicola

Genomic Location: SGJC01000601.1:10399...12789
NR annotation: KAF0991752.1, hypothetical protein HZS_4516, partial [Henneguya salminicola]
Species Henneguya salminicola · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAF0991752.1

ATGTCGATCACATCTAAATTCTTCGTACAAGGTTCATCAGAATCTGAAACAGAGAGTGAAGAAGAAGAACAGATTGTTGTTAAAAAAGTTCCTGTTTCTTTTGCAGATTTTAGCGATGAGGAAGATAAAGTTAAAAGAATTGTCAAAAGTTTAGCTGAAAAAAAACGGGATGAATTTTCAGGAATAACTAAAAAATTAAAAAATTCTCTCAAAATAAATGATTTGGAATCAGTTTTAACTGAATTCGATCAATTGCATCGTGCTATTCTGAAATTCAAAAACACAGAATTGCCTAACCCTGTAATTAAATTACTTACTGAACTCGAAGACACCATAAAGAAAATATGGGAGGACAAAGAACTAAAAAGCAAGTTCAGTAAAAATAAAATAAAAGTCCTAACAACATTAAAACAAAAAATGAAAAAACAAAATAAGGAATATGAAGAACATATTCAAAATTGTCGAACTAATCCCAATAATTATGAATCCGATTGGGAACAGGAATCCATTGAAGAATCAGAAGACGAGACACCACAATCTAAACCGAAAGAAGCTCGTTTATTTGGCGCGAGCGCATTCATAAAAACTGAAAAAGTCAAAGAAGTTCAGCAAAAACGTGAGCGCAAAATCAAAGTCTCCAAAAAGAAAAGCGACGATGAAGAAATTCCTATAAAAAAATCAACAAAAGCAACGAAAGAATTATTTAGCCCAGATGAAATAATCGATGTAGAAACGGCGGTAGATAAAATGCGCCAAATTTATAAATTGCGGGGCAAAAAAATATCTGACCGCGCTATTTTATCCTCGTTTTACGATCTTAAAAAAATATTTGAGTTTAAAAATTTCGGCAATGCCCTTTTAATCAAAATTAATCTTATGATAATTTCTCTTCAAAATGATACCTTCGTTGGGGACGCAGCTCTCAGGCCGGATCAATGGAAAATGTTATTAACAAATTATCATAGGTTATTATCTCTTCTCGTATCTACCCCTGATGTTATACTCAAGGACGATATTTTAGAGGAGCAAGAGACATTTACAAAACCGCCTTATATACTCATGGGCAACTGTGTTCATATCATTTTTAAAATCAATGAGGAATTAAATAAAATGATGCAAATTTGTGACTGCTACTCTCTTGATTATCTCAATAAAATGAAAGATGTGCTCTTTTTCTCGGATCTTGTCGGTCTTCTTCAGTCTTATATCGAGAAAAGAGGGTCTGTTCGACAGATATGTGACGTATATATGCTGAGAGTCGAACAAATGTATTATAAGTTAGATTCAAAGTGGTTAATGTCCTTAAAAAATCAGCTGTTGTCGGAGTCTATATCATTTAATACCTCTCAAATAATGAACGATGAGACCAACGAGAAAAATCTTTTGAATCGTTTGTGTCAGTATCTTTATAAAAACGGCACAGATCGGATTCCTACTCGTGCGGCTCTTTGCCAGATTTACCATCATGCGATTCATGATCGTTGGTGTCAGGCCAAACAGCTTTTTTTAATGTCTCGTATTCAGGAGACGATCCACCACAGTGATATACAAACCCATATTTTGTATAACCGTACCATGGTTCAATTAGGATTATGCGCATTTCGACAGGGATTTTTTAAAGAATCGTTAAATATATTAAGAGAAATTCAACTCACTGGCCGATCTAAGGAATTACTTGCCCAAGGACTGATCATGAGGAATTCTGATCGCTCCGTTAAGCAGGAAGTATTTGAACGCCAACAATTATTACCTTTTCACATGCATATTAATCTCGAGCTGGTTGAATGTGTATATTTGGTCAGTATCCTAATAACTGAAGCTGCTTATTCAGTTGCTCCCACACAAGAGCAACGTAATAATTTTAATTCTCGGGGTTTTATGTATCTTTCGAGAAATATTGAGAAACTAGCAATTCAAGGACCTCCTGAAACAATGAGGGAATCAATATATGCTGCATTCAAAGCACTAAGAAATGGCGACTGGCGAGCATGCGTATCTCATATTAAAAGTATAAAATGCTGGAAATTACTAGTTCATGCTGATTCAGTGCTTGATAATCTTATCAAAAGACTTAAACAAGAATGTGTCGCAGCATATATTTTTACCAATTGTGGGGCCTATGAAAAAATTAGACTATCATATTTGGTTGATAAATTTGAACTGAATGAAACCGAGATAAAACTAGTGATAAATCGACTTATACTTCGTGATAATTTTCCTTCAAAATGGAATCAAGATTCTACTATTCTTACTATATTTCACGATATGCTCCCAAATAATATCAATTTATTATCCTGCTTGTTTCTGGATCGGCTTGATATACTGTCTGATCAACACCAACGTTTGTCAGAAGCAGAGAATATGATTCATAATTTAAAAGACAAATTTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17Q06	Eukaryotic translation initiation factor 3 subunit C OS=Aedes aegypti OX=7159 GN=eIF3-S8 PE=3 SV=1
B0W0S3	Eukaryotic translation initiation factor 3 subunit C OS=Culex quinquefasciatus OX=7176 GN=eIF3-S8 PE=3 SV=1
Q7PMU8	Eukaryotic translation initiation factor 3 subunit C OS=Anopheles gambiae OX=7165 GN=eIF3-S8 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001785 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05470 all species →	eIF-3c_N	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027516 all species →	Family	Eukaryotic translation initiation factor 3 subunit C	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008905 all species →	Domain	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13937 all species →	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03252	EIF3C; translation initiation factor 3 subunit C	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.