Gene detail

Detailed information of KAF0992441.1 in Henneguya salminicola

Genomic Location: SGJC01000315.1:2663...4962
NR annotation: KAF0992441.1, hypothetical protein HZS_132, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAF0992441.1

ATGTATGGTGAATTCGGTAGATCACGAGGACGCTTTCGTCAAAATAGGATACAAAACAGACATATTACTAGCGAATCGTTAAATGAAGCTGACACAACCGATCAAAAATTAGAAAATAAACCTACTGTTCATAAATTGTGCTTTCAGCACGAGGATGAACATGACACGTTTGAAATTAAAAAAAAACGAGAGCCAATGAAGAAATTCGCACATGTAGATTCTGATGATTTAGTCTTTAATAAAGCTTGTATTACCACTAAAGGAAATAAAATAATTGACAAAAATGATCATTCCTTTTCTGTAAATATTAAACCAATTGATAAAATCAATCAAAAAATTGAACCGAAAATAGATGTGGAAACCAGCAATCCTATTTGGGAAGATCTTGATCATAAATATGAAGAAATCGAGCATCAAGTAATTAAAATCCCGAACGCTGCAACTATATATGCAGTTAAAAAAAAGCGCCAAAATATTCGAACAAATAAAGATCAAATTATTCCAATTGAAAACACGATAACATATAAAAGTCAACCACAAAGTACTTCAAGATTAGTTCGCGAAGGTGAAGGGTTTAGCACATCCGATGAAGAATTCGCAGAAAGTACCAAAGATCATATTCATTTAAACCAAAAATTTGAAAATAGTTCAGAAACAGAAGAAATTGGCATTAATTCCGAAGAGGACGAAGAAACCCGCTTGTGGGAAAATCAGCAAATATCTAAAGGAATTCAGCACTCATCAATAAAAATTAAGAATTCTTTCGGACCTAACGTTCCTTCATTTTTGCGAAATTTAAATACAGTTTCATCAAATTTAACTCAAACATATCAATGTTCATTGCCCTGTACCTCAATTAATGATATTATTAATACAATTAATGTGAAAATATCAGATTTACAAACCAATTTAATAAATCAAAAAAACTCTGCCCAAGATTTGGACGAACGAATCAATGCCACGGTAAAAGACGTTGACAGAGCTGAATCTCAATATAGTGGTATGAAAGATAGTTATGAGTTTTATCAATATGTTTTTGGTTATTTAACTGATTATATTTCTTGTTATGATGAAAAAATCACCGCCATATTGGACTATGAAAATTCTATATTTGAAATATTCCAACAATCCACGACGCATTATAAAAAATTGTTTGAGGAATTTTCAAAAATCGATGATCTCATTAATTCTTACGCTGAATTAAATTCTGATGCTCAATCCAACGTTAAAATCATAAACGAATTTATTTCAACGTGTCATAATTATTTAAACACTAATATGTTTTTAGACGGTGTTGAAAAAATAAACAATATTAAAACACAATGTCTTGAATTAACAGATGATGCACTGTTAGAATTTTATGATTTGGATGCAATTTTGAACGTATTTTTACGTTGGAAGTGCCATTTTGTTAATAGTTATATGCAGGCGTATATTAATATTTCTTTGCCTAAATTGCTGCTTCCTGTTTTAAATATTCATTTGATAGATTGGTGTCCACTGACGGATTCAACTGGTATTAAGAATCATGAGTGGTTTAAAAAACTAGTTCTTTATTCCACGGCCACATCTGATTTTTCAGAACAAATGCCAGATCAGATGCTTATATTAAATTTATACGAAGAAATTTTATGCAAAAAAATCATTCGTTTTATTGAAATCTGGGATTGCTATTCGTATTCGCAGACGTTAAATTTGCGAAACATTGTTAGTTGGATGTTTAATGATAATCCAATTATCGATGAGCATAGCTCTAATTTTATGTTATTGTTTAAAAATTTATATGAAAAACTTTTATCGGCGGCGCACGATATTTATATGCCAATTTATCCAGCAAGATTAATTGAAAATGACGAATCCGGGGCCATCATTTTTATATTAAATCAAATTTCTTTATGTAATATATTTTTAAAAAATTGTATTCTTTGGCTAAATTTAATTGATACTATTAAATTAAAAACATTAGTTGTTGATATATTAATTAATAAATATATAATTGTGGGATTAATACAAATTCCTGATGTTTTTTTGTCTCTTGATTTTTGCACTCAAATATTAAATATTGTACCAAATAATTGGTTCTATAAAGCTTCTACCGACACTGTTCATTCTTTACCTGTATTTATGGGGATAGTTGAAAAAATGCTCAACAATATTAAAGAACAATCTTCTGAAGATATAGAACTTTGCCAAAAAATC

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P16383	Intron Large complex component GCFC2 OS=Homo sapiens OX=9606 GN=GCFC2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	GCFC

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15458	NTR2	Nineteen complex-related protein 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028211	Family	Pre-mRNA-splicing factor Ntr2	Interproscan
IPR012890	Family	Intron Large complex component GCFC2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12214	GC-RICH SEQUENCE DNA-BINDING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000390	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13211	GCFC; GC-rich sequence DNA-binding factor	-	Spliceosome	ko03041	deepkoala