Gene detail

Detailed information of KAF0992548.1 in Henneguya salminicola

Genomic Location: SGJC01000272.1:827...8246
NR annotation: KAF0992548.1, hypothetical protein HZS_7881, partial [Henneguya salminicola]
Species Henneguya salminicola · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAF0992548.1

ATGTATACCAATATAATCTACCAAAATACTTCAAAACCAATCCTTGACAGCACACAAACACCTATGTCCTCCGTAGTTACATCTGTTGAGAATCAAGCCACAGACCAAATTACAATGAATGCCCCTGGATTTGGTCATGGGAAAAATTTCCCCTCAGCATCAGGTCACGTGGTATATGATCGTATGTCAAGCATACTCGTTAATGAGCCTGATCTTATGGATGAATTTATTAATTTTTTACCAGAATTTGTGTTAAATGAAATTTCAGACAGTCCTGATACAATTTTGAAATTAAAACGAAAGCAACCGTCTCTTGAAGAGACATCCCCAAAAACTGTTCCCATTAAAATAAAAGTTTCAAAAAATAATCTTAACGATTTATCAAATTCTGTTGCAAAATTACAAACTAGTGAAGATTCTTATCAATCTCCAATGGATGATTATATTCCATATTTTCAGCCCAACTGGTTTCTAGCTCGGGATGTAAATTCTCGATTTTTCGATGAAAATTTATTCAAAACTATATCCAAAACTATACCTAGAACTATTTGTACACATCTTATGAGATGTATTTCCCTTTTTAATATGAGCCACCTTTCTCCTGCCGATACAATTACTCTACTTCACCAGGCTTTAAAAGATTATCCAACTATTTTTTTAAGTATAAAGAAAAAAATCACAGAAGGACTAGATTTGAACCACGAGAATAACTCTAATAATACAAAAAATCTTACCACTGATGTGAACGTTACTAGCATTGTCGCTAATAATCAACATATTGAATTCCATCTATCAAAACGAATCGGTCAAAGTTATTGGCCATATAAAAAAGGATATAATCCACCTAAATCCAGTGGCCGTACTTCTCTCGCAGAAGAGGTTCTCAATGATTATTATGTATCTCAACCTATTTTAACTGAGGATACTCCTTTTCCTGGTTCCAAAAAAACATTGTCTCTCGAAGCATTGAACCTCATTGAACAAGAACGATATGATCTTGATATGATAAAACATTCCAATCGAGAAGCTGTTGCGTTTTTAGAAAATCTGCAGATAGAAATTAATTCTGGCATAAAATTACCAACTATAGATCTTATGCCTAATCCTGATTCTTCTTTCTCAGTCATCAATTGTTTAAAAGCGTTGCAAAGAATTTACGGGGAACACATATCCTTGATTGTTGAAGGTCTAAAAAATTTATGTCATGAAACACTTCGGATGGTAATTAAAAGTTTAAAGGTTAAAGGAGAAGAGATATCAGATAATCAGCATAGAATGAATCTAATCTGGTGGTTTGACATTCGTAAGCATTCCTTAAAGTCTTTGGATTTCCAAGGTCCGTCTTTCAAAATATCCGACACTAAAGACATGAGAGTTAAGCATATGGTTAGGGAATTAGAGCTTAATGAGGATTGCGCATTGCCGAAAGAAGTTGTCATCACCTTTAATGACCAAGAAATAAGTTTAAGTGCTCTACATTTTATAAAATATTCAGTCAAAAAATTAACAAATGTCAATAAAACAGAAAAAATAAAAATAAATTCATATATTAAAATATTTCATGGTTGGATTTTTAAATTGAGCCCCGATATGTTACGAATGACTGAGGAAGGATTGGCCGAAGAAAATAATGCCGAATTACCGGAATTTAAAAATTCGACCCAATTTTATGTCACAACCAATATTTATGTTTATCTCAGACTTTATCATCTTCTTGTAAAACGTCTTTCTTTGGTCCATGAAATGTCCGATAAAAATATCGATACGACATTTTATCAAAATCTTGCTTTTTTTACTAATCCTTTACCTTCTTCGCAATATAATTTTGATCCTCAACTTAAGGGACTAGCACATCCTATACCTCGGATTATTAATTCTTCTAAAAATACGAATAAAGCCGATATTTTTGACCAGTTTCAAAATATGGTCTATAATCTTATCGATGGAAACATTGATAATGATTATTACGAAGAATGTTGCAGGTGTATTTTTGGTTTAGATTCTTATGTTCTGTTTACAATCGACAAAATAATAAGTGGAATAATGCGACAGTTAAATTATATTGCAGTTGATTCATCAAGTAAAAACTTGCTAAATGACTTGTCTATGATTGTAACTAAATATCCTATTAATCCTGATACAGGAGAAGTAATTAATCAACTAGAATTTATTAAATATTGGAAATGTGTTTTTGAGAATGATTCCTGTTATTCAGTTTTGGTGAAAAAAGATGGCAACTCTGTTTCAATGAAATTTCGATCAATTGATACTGGAATGAAACATGATACATCAGAACTAGACGAATCTGCAGATGAAGAATGGGCCGATTATATTGCAGATTTTGTGTCATTGGAAAAAGAGCATTTCAATAATAATCGTCGTCGTTGTTATGGATTCTCTGGTGTGTTTCTTAATAAAAATCAAATTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60520	Paired amphipathic helix protein Sin3a OS=Mus musculus OX=10090 GN=Sin3a PE=1 SV=3
Q96ST3	Paired amphipathic helix protein Sin3a OS=Homo sapiens OX=9606 GN=SIN3A PE=1 SV=2
Q62141	Paired amphipathic helix protein Sin3b OS=Mus musculus OX=10090 GN=Sin3b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08295 all species →	Sin3_corepress	Sin3 family co-repressor	Domain	Interproscan
PF16879 all species →	Sin3a_C	C-terminal domain of Sin3a protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013194 all species →	Domain	Histone deacetylase interacting domain	Interproscan
IPR039774 all species →	Family	Transcriptional regulatory protein Sin3-like	Interproscan
IPR031693 all species →	Domain	Sin3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12346 all species →	SIN3B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16569	TUBGCP2, GCP2; gamma-tubulin complex component 2	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.