Genomic Location: SGJC01000240.1:7876...11001
NR annotation: KAF0992635.1, hypothetical protein HZS_6689 [Henneguya salminicola]
| CDS | |||||
| KAF0992635.1 | |||||
| Transcript |
| - |
| Protein |
| KAF0992635.1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| P97496 | SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2 | ||||
| Q92922 | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens OX=9606 GN=SMARCC1 PE=1 SV=3 | ||||
| Q8TAQ2 | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | MYB |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| PF16495 | SWIRM-assoc_1 | SWIRM-associated region 1 | Family | Interproscan |
| PF04433 | SWIRM | SWIRM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049898 | Domain | MarR-like, BRCT and chromo domains module | Interproscan |
| IPR001005 | Domain | SANT/Myb domain | Interproscan |
| IPR036420 | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR009057 | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR001357 | Domain | BRCT domain | Interproscan |
| IPR007526 | Domain | SWIRM domain | Interproscan |
| IPR017884 | Domain | SANT domain | Interproscan |
| IPR032451 | Domain | SMARCC, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12802 | SWI/SNF COMPLEX-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0016514 | Cellular Component | SWI/SNF complex | Interproscan |
| GO:0042393 | Molecular Function | histone binding | Interproscan |
| GO:0045893 | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11649 | SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C | - | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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