Genomic Location: SGJC01000058.1:17071...17717
NR annotation: KAF0993166.1, hypothetical protein HZS_3356 [Henneguya salminicola]
Species Henneguya salminicola · all data for this species · gene families
| CDS |
| KAF0993166.1 |
| Protein |
| KAF0993166.1 |
| UniProt accession | Description |
|---|---|
| Q7SXS2 | Protein YIPF5 OS=Xenopus laevis OX=8355 GN=yipf5 PE=2 SV=1 |
| Q66KA5 | Protein YIPF5 OS=Xenopus tropicalis OX=8364 GN=yipf5 PE=2 SV=1 |
| Q5E9E8 | Protein YIPF5 OS=Bos taurus OX=9913 GN=YIPF5 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003474 (this species only) · gene tree & orthology |
KAF0993166.1 in Henneguya salminicola.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045231 all species → | Family | Protein Yip1/4-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21236 all species → | GOLGI MEMBRANE PROTEIN YIP1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005802 all species → | Cellular Component | trans-Golgi network | Interproscan |
| GO:0006888 all species → | Biological Process | endoplasmic reticulum to Golgi vesicle-mediated transport | Interproscan |
| GO:0048280 all species → | Biological Process | vesicle fusion with Golgi apparatus | Interproscan |
KAF0993166.1.Genes whose expression across the transcriptome samples of Henneguya salminicola tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Henneguya salminicola, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
