Gene detail

Detailed information of KAF1743632.1 in Myxobolus squamalis

Genomic Location: scaffold_3357:600...2560
NR annotation: KAF1743632.1, hypothetical protein MXB_3230, partial [Myxobolus squamalis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8VYP6	Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana OX=3702 GN=At5g11010 PE=1 SV=1
Q9UU96	Polynucleotide 5'-hydroxyl-kinase grc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=grc3 PE=1 SV=1
Q9U3B6	Polynucleotide 5'-hydroxyl-kinase nol-9 OS=Caenorhabditis elegans OX=6239 GN=nol-9 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16575	CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045116	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan
IPR032319	Domain	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000448	Biological Process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0051731	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06947	GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9	EC:2.7.1.-	Ribosome biogenesis	ko03009	deepkoala