Gene detail

Detailed information of KAF1743767.1 in Myxobolus squamalis

Genomic Location: scaffold_1162:490...3005
NR annotation: KAF1743767.1, hypothetical protein MXB_1870 [Myxobolus squamalis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-gnl|WGS:QWKW|scaffold_1162-processed-0.1-mRNA

ATGAGTGATGATGATTGGGACGAAAACCAGCCAGTTGCTGGGCGGCTAGAGAGTAATGctaaatttgaagaaaatttcaaaggTATCgtccatatttttatacaagaaATGATTGGGAATTTTGCAAATATCTCTAGTTCTGACAGAGTGCCGTATAAACCAACGCCGACCCGGGAGTATGACAGAAATGACCGCAACAATTCAAGGGAAATCAACAACGACTACCAAGAGCGTAATTACTCAAGGCCATCTAATTCATATCGTGACGCaccgCGCCAATTCGGAAATCGAGATGGCGAAAATAATCGATTTGAAGAACCTCGACGTTTTCGTGATGAGGGCGCAGTAAATTTTGATCGGAGCGAAAGATCACGTGGTGGTAGACTCGAAAACGACAATTTTAACTCGGAACATAAAAGAGATACACCAGATCAATTTTCACAAggTGTGCCCAAGAGACGATTTGAAGATGAGGAAGGAAAAACTAGACCACCTCTTTACACCCCACAAGGACCATCAGATGCAGTTGAagatattttccaaaaaaatgtgattGAAGGAATTGactttgataaatataaaaatatcaaagttCAAATATCTGGTGGTGACAAAATGCAAGATGTTATTCAATCTTTTGACACAAACTCTGGAATATCTCAGAGCGTGGTTGATAATATTACTCACTGCGGTTATAAAACTCCCACACCTGTGCAGAAATTTACGATTCCCATCATTCTTAAAGGTGAATATGATATTATGGGTTGTGCACAAACTGGATCAGGGAAAACTGCAGCTTTCATTATACCCATCTTTACACGCATAATCGAAGAAGGTTGTGCTCACGATGAATCGATAATTGCTCCAGAACTTCTTGTTCTCGTTCCTACTCGTGAACTATCATGTCAAATTTGGTCTGATATGCGCAAATTGGCGTATGGAACCTCGATTCGTACTGGTGTTGTCTACGGGGGAGTCAGTAGACAGTTTCTGATGAAGTACCTTAGCAGAGGATGTGATGCCCTAGCAGCGACTCCTGGGAGGCTATTAGATTTCTGTAATAGAGGCGAAGTTTCCCTAAAGAATCTAAAGTATTTAGTCTTGGACGAAGCTGATCGTATGCTTGATATGGGGTTTATCGGCGATATTCGGAAAATTATATACTCTGTTGGAATGCCTGATGCAATGCGTCGAAAATGCTACATGTTTAGTGCAACTTTCCCAGTTGAAATTCAAAAGCTTGCACGTGATATTCTAGCACCTGATTACTATTTTCTCACTGTTGGGATTGTGGGTGGTGCTGCTGACTCTATTaaacaagaaatatttagtatttttccTCAACACAAACGTGACAAATTGGTTGAGATTCTACAACAATACTCAAACTCGAAGACTCTAATTTTTGTGGAAACAAAAAGATCTGCCGATTTTCTGACAACCTTTTTGTGCCAGAAAAATGTTAAAGCCACAAGTATACACGGTGATCGTTTTCAGGAACAGCGAGAGGAAGCATTAAGAAGCTTTAAAACGGGATATACTCCTGTTCTTGTGGCTACTTCTGTTGCTGCACGTGGGCTCGATATTCATGGTGTTGATGTTGTTGTGAATTTCGATCTTCCCTCTGATATTGACGAGTACGTTCACCGAATTGGACGTACTGGTCGTCTTGGAAATAAAGGATCTGCCATTTCTTTCTTCACACCTGGTACGAATGATTTACTTGCTCCATTGCTATTAACTGCTAACCAAGACATTCCTGATTTCCTTACCAACTATGACTATTCGTCTACTGGGTCTACTAGAAACTTTGTGCACTCGAAAGATGATCGTGAgATTTCGAAACGCCTATACCGTGCTTACTCGTCAAATGCGCCTGATAATACTGGTTTGAATTTCACACCCACGAGTGTGTCTGAGGTTGTTGATGAAACCTGggattagaaaaaaatattatattatactaatattttaattcatatgcgttatttgatatattttct

Protein

Uniprot

Uniprot term	Description
Q3MSQ8	Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q4R5S7	Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13982	DDX4, VASA; probable ATP-dependent RNA helicase DDX4	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala