Genomic Location: scaffold_1540:1157...3095
NR annotation: KAF1744125.1, hypothetical protein MXB_3270, partial [Myxobolus squamalis]
Species Myxobolus squamalis · all data for this species · gene families
| CDS |
| MXB_3270 |
| Transcript |
| rna-gnl|WGS:QWKW|scaffold_1540-snap-0.2-mRNA |
| Protein |
| KAF1744125.1 |
| UniProt accession | Description |
|---|---|
| Q9WUA2 | Phenylalanine--tRNA ligase beta subunit OS=Mus musculus OX=10090 GN=Farsb PE=1 SV=2 |
| Q9NSD9 | Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens OX=9606 GN=FARSB PE=1 SV=3 |
| Q5R7F7 | Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii OX=9601 GN=FARSB PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003624 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17759 all species → | tRNA_synthFbeta | Phenylalanyl tRNA synthetase beta chain CLM domain | Domain | Interproscan |
| PF03484 all species → | B5 | tRNA synthetase B5 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041616 all species → | Domain | Phenylalanyl tRNA synthetase beta chain, core domain | Interproscan |
| IPR020825 all species → | Homologous_superfamily | Phenylalanyl-tRNA synthetase-like, B3/B4 | Interproscan |
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR005147 all species → | Domain | tRNA synthetase, B5-domain | Interproscan |
| IPR045060 all species → | Family | Phenylalanine-tRNA ligase, class IIc, beta subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10947 all species → | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000287 all species → | Molecular Function | magnesium ion binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006432 all species → | Biological Process | phenylalanyl-tRNA aminoacylation | Interproscan |
| GO:0004826 all species → | Molecular Function | phenylalanine-tRNA ligase activity | Interproscan |
| GO:0009328 all species → | Cellular Component | phenylalanine-tRNA ligase complex | Interproscan |
KAF1744125.1.Genes whose expression across the transcriptome samples of Myxobolus squamalis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Myxobolus squamalis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |