Detailed information of KAF1744328.1 in Myxobolus squamalis

Genomic Location: scaffold_2665:3490...3835
NR annotation: KAF1744328.1, hypothetical protein MXB_405, partial [Myxobolus squamalis]
Species Myxobolus squamalis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q10159Adenine DNA glycosylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=myh1 PE=1 SV=1
F4JRF4Adenine DNA glycosylase OS=Arabidopsis thaliana OX=3702 GN=MYH PE=3 SV=1
P83847Adenine DNA glycosylase OS=Geobacillus stearothermophilus OX=1422 GN=mutY PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005361 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for KAF1744328.1 in Myxobolus squamalis.
 InterPro
InterPro termTypeDescriptionSource
IPR023170
all species →		Homologous_superfamilyHelix-hairpin-helix, base-excision DNA repair, C-terminalInterproscan
IPR044298
all species →		FamilyAdenine/Thymine-DNA glycosylaseInterproscan
IPR011257
all species →		Homologous_superfamilyDNA glycosylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42944
all species →		ADENINE DNA GLYCOSYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000701
all species →		Molecular Functionpurine-specific mismatch base pair DNA N-glycosylase activityInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0006298
all species →		Biological Processmismatch repairInterproscan
GO:0016798
all species →		Molecular Functionhydrolase activity, acting on glycosyl bondsInterproscan
GO:0032357
all species →		Molecular Functionoxidized purine DNA bindingInterproscan
GO:0034039
all species →		Molecular Function8-oxo-7,8-dihydroguanine DNA N-glycosylase activityInterproscan
GO:0035485
all species →		Molecular Functionadenine/guanine mispair bindingInterproscan
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07108K07108; uncharacterized protein-Function unknown-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Myxobolus squamalis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Myxobolus squamalis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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