Genomic Location: scaffold_564:100...2955
NR annotation: KAF1744454.1, hypothetical protein MXB_2066 [Myxobolus squamalis]
Species Myxobolus squamalis · all data for this species · gene families
| CDS |
| MXB_2066 |
| Transcript |
| rna-gnl|WGS:QWKW|scaffold_564-snap-0.6-mRNA |
| Protein |
| KAF1744454.1 |
| UniProt accession | Description |
|---|---|
| P57737 | Coronin-7 OS=Homo sapiens OX=9606 GN=CORO7 PE=1 SV=2 |
| Q5RBW3 | Coronin-7 OS=Pongo abelii OX=9601 GN=CORO7 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004066 (this species only) · gene tree & orthology |
| Transcription factor family | TF_bZIP · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00170 all species → | bZIP_1 | bZIP transcription factor | Coiled-coil | Interproscan |
| PF08953 all species → | DUF1899 | Domain of unknown function (DUF1899) | Repeat | Interproscan |
| PF16300 all species → | WD40_4 | Type of WD40 repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR004827 all species → | Domain | Basic-leucine zipper domain | Interproscan |
| IPR015048 all species → | Domain | Domain of unknown function DUF1899 | Interproscan |
| IPR046347 all species → | Homologous_superfamily | Basic-leucine zipper domain superfamily | Interproscan |
| IPR015505 all species → | Family | Coronin | Interproscan |
| IPR011047 all species → | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10856 all species → | CORONIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
KAF1744454.1.Genes whose expression across the transcriptome samples of Myxobolus squamalis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Myxobolus squamalis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |