Detailed information of KAF1744714.1 in Myxobolus squamalis

Genomic Location: scaffold_393:1981...2500
NR annotation: KAF1744714.1, hypothetical protein MXB_1622 [Myxobolus squamalis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9SUM2Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1
Q3T0Z8Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2
P62306Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan
IPR034100FamilySmall nuclear ribonucleoprotein FInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11098SNRPF, SMF; small nuclear ribonucleoprotein F-DNA replication proteinsko03032deepkoala

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