Gene detail

Detailed information of KAF1745090.1 in Myxobolus squamalis

Genomic Location: scaffold_269:1031...3284
NR annotation: KAF1745090.1, hypothetical protein MXB_746 [Myxobolus squamalis]

Gene Structure

More details in Jbrowse

Sequence

CDS

MXB_746

ATGGTAAGTAAGCTTTTAACTGCAATGAATGAATGCACGGAATGGGGGCAAATCTCAATTTTGGAATGTCTTAGTCGATATGATTGTCAGTCTGAGAACGAGGCACAAAGTATATGTGAGCGCGTAACCTCACGCCTTTCTCATTCTAATGCAGCGCTCGTTTTTTCAGCAGTTAAAGTATTGTTGAAGGCTATTGTGCTTCTTGGGCCAGAAAACTCGTTAATGTCTCAAATCTTGACAAAAATATCACCTCCACTAATAACCATGCTTAGTTTAGAATTTGAAATTCAATATGTTGCACTACGCAATATAAATTTGATTGTTCAAAAATATCCTTCTATTTTGAAACAGGACACAAAATCATTTTTTGTTAAATACAACGACCCTATTTACATTAAGCTTGAAAAATTAGAAATTCTAATAAAATTAGTGAGTGAGGAAAATGTGAATCAGATCCTAGCAGAACTTAAAGAATACGCATCTGAGGTAGATGTAGACTTTGTTCGTCGCTCTGTCCGTGCAATTGGAACCTGTGCTCTCATGACTTCAGCTAATAGATGTGTCAATACATTGGTCGAATTGATCCAAACAAAAATCCCATACGTAGTTCAAGAGGCTGTTATAGCAACCAGGGATATTATGCGAAAATTTCCAAAAACATATGACGGTCTTATCCAACAATTTTCCGGAAATTGGTGGACAATTGATGAACCTGAGAGCCGAGCCGCCTTTATATGGATTGTGGGGGAGCTTAGTGACAATTTAGAAAATTCACAAGATATTCTCAAATCTTTTGTTTCGTCTTTTTTTGAAGAGAACTCGGCAGTACAACTTCAAGTGCTGACTGCTGTGGTTAAGTTGTTTCTGAAAAAGCCAACGGAAAATCAAGATCTTGTGCAGGAACTTTTAACACTGGTCACTCAGAAAGTTGTTAATCCTGACATAAGAGACCGTGGGTTTATCTACTGGCGTCTTCTATCAACCGATCTCGCTGCTGCCAAAGAAATAATTTTAGCCCCAAAACCTGCAATCTCATCAGAATCAGATAATCTTAACCCAAATCTCCTTGATGAACTTCTTCTTAATCTCTCCTCACTATCTTCTGTATACCATAAACTGCCAAAGACACTTGTAGACGGGCGTGTTCATCTTCACGATGAACTCAAAAAATCGGCTTTAAACCTTAAAATAGATCTTGAAAGCTCCTTTAAACGTTTTGATGAAAAGCTATCCACAAATTTTGATAGTGTAGCACAACAAGACAGTTCAACATTCAACAACTACCAGGATGATCTTCTTGATTTGGATTTTTCTATTCCTTTTAGTGGTATTAATCTTCCTCAGGCAACCAAAACTGCTGATAGCATGGATATGTTGTCTGATATATTTTACACTGCATCTGTCTCACCAGGAGCATCCAAAACTTTGCCCACAGATGCCCTTCATCAGGTTGATCTGTTTAGTGTTGTTGAACATACCTTTAATAACGACTCCTATAAACCACCTCCATCGACTTGGTTGACCTCTGTTGCTGGAAAAGGACTTGAGGTAGTTGGGCAGTTTAACCTTTCTCCCTCTCTATCTATTTCTATGACTCTCTTCAACCAAGCACTGGCTCCTTTCTCCAATTTTACTATTCAATTGAATAGAAATTACTTTGGGTTAGCTATCAAGGGTCCAGTTGTCTTTCCTCTTAGTCTTTCACCAAAAAATACTTCTAACGTTACGGTTTCCTTAGAATTTTGTATATATTATATTTCATTTCTAGCTGGCCCCCCAACCACCACAAGTGCCAACATTGAGGCCGTCCAGGTTGCAATTAAGAACAATGTTCACGTGTTCTATTTTACTGTCAATTTCCCTCTTCATTTTTACTTTAAAAGTCCTGAAGAATGCTCTATTACTGAACAAATGTTTGATAATTATTGGTCATCTTTACCACCTGACTCCCAACAAGAGCGTATGATATCTACTTTACCTATATCTCAAACCACCTGTTTGTGCTGGGTATTGTATTTTAATGAATAA

Transcript

rna-gnl|WGS:QWKW|scaffold_269-snap-0.8-mRNA

ACTTTCCATAAACATGGTAAGTAAGCTTTTAACTGCAATGAATGAATGCACGGAATGGGGGCAAATCTCAATTTTGGAATGTCTTAGTCGATATGATTGTCAGTCTGAGAACGAGGCACAAAGTATATGTGAGCGCGTAACCTCACGCCTTTCTCATTCTAATGCAGCGCTCGTTTTTTCAGCAGTTAAAGTATTGTTGAAGGCTATTGTGCTTCTTGGGCCAGAAAACTCGTTAATGTCTCAAAtcttgacaaaaatatcaccTCCACTAATAACCATGCTTAGTTTAGAATTTGAAATTCAATATGTTGCACTAcgcaatataaatttgattgttcaaaaatatccttCTATTTTGAAACAGGAcacaaaatcattttttgttaaatacaACGACCCTATTTACATTAAGcttgaaaaattagaaattctaataaaattagtGAGTGAGGAAAATGTGAATCAGATCCTAGCAGAACTTAAAGaaTACGCATCTGAGGTAGATGTAGACTTTGTTCGTCGCTCTGTCCGTGCAATTGGAACCTGTGCTCTCATGaCTTCAGCTAATAGATGTGTCAATACATTGGTCGAATTGATCCAAACAAAAATCCCATACGTAGTTCAAGAGGCTGTTATAGCAACCAggGATATTATGcgaaaatttccaaaaacaTATGACGGTCTTATCCAACAATTTTCCGGAAATTGGTGGACAATTGATGAACCTGAGAGCCGAGCCGCCTTTATATGGATTGTGGGGGAGCTTAGTGacaatttagaaaattcacAAGATATTCTCAAATCTTTTGTTTCGTCTTTTTTTGAAGAGAACTCGGCAGTACAACTTCAAGTGCTGACTGCTGTGGTTAAGTTGTTTCTGAAAAAGCCAACGGAAAATCAAGATCTTGTGCAGGAACTTTTAACACTGGTCACTCAGAAAGTTGTTAATCCTGACATAAGAGACCGTGGGTTTATCTACTGGCGTCTTCTATCAACCGATCTCGCTGCTGccaaagaaataattttagccCCAAAACCTGCAATCTCATCAGAATCAGATAATCTTAACCCAAATCTCCTTGATGAACTTCTTCTTAATCTCTCCTCACTATCTTCTGTATACCATAAACTGCCAAAGACACTTGTAGACGGGCGTGTTCATCTTCACGATGAACTCAAAAAATCGGCTTTAAACCTTAAAATAGATCTTGAAAGCTCCTTTAAACGTTTTGATGAAAAGCTATCCACAAATTTTGATAGTGTAGCACAACAAGACAGTTCAACATTCAACAACTACCAGGATGATCTTCTTGATTTGGATTTTTCTATTCCTTTTAGTGGTATTAATCTTCCTCAGGCAACCAAAACTGCTGATAGCATGGATATGTTgtctgatatattttacactGCATCTGTCTCACCAGGAGCATCCAAAACTTTGCCCACAGATGCCCTTCATCAGGTTGATCTGTTTAGTGTTGTTGAACATACCTTTAATAACGACTCCTATAAACCACCTCCATCGACTTGGTTGACCTCTGTTGCTGGAAAAGGACTTGAGGTAGTTGGGCAGTTTAACCTTTCTCCCTCTCTATCTATTTCTATGACTCTCTTCAACCAAGCACTGGCTCCTTTCTCCAATTTTACTATTCAATTGAATAGAAATTACTTTGGGTTAGCTATCAAGGGTCCAGTTGTCTTTCCTCTTAGTCTTTCaccaaaaaatacttctaaCGTTACGGTTTCCTTagaattttgtatatattatatttcatttctAGCTGGCCCCCCAACCACCACAAGTGCCAACATTGAGGCCGTCCAGGTTGCAATTAAGAACAATGTTCACGTGTTCTATTTTACTGTCAATTTCCCTCttcatttttactttaaaagtCCTGAAGAATGCTCTATTACTGAACAAATGTTTGATAATTATTGGTCATCTTTACCACCTGACTCCCAACAAGAGCGTATGATATCTACTTTACCTATATCTCAAACCACCTGTTTGTGCTGGgtattgtattttaatgaataa

Protein

Uniprot

Uniprot term	Description
O35643	AP-1 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap1b1 PE=1 SV=2
Q10567	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=3
P52303	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR026739	Family	AP complex subunit beta	Interproscan
IPR016342	Family	AP-1/2/4 complex subunit beta	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR013037	Homologous_superfamily	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan