Gene detail

Detailed information of KAF1745244.1 in Myxobolus squamalis

Genomic Location: scaffold_158:910...5691
NR annotation: KAF1745244.1, hypothetical protein MXB_370, partial [Myxobolus squamalis]
Species Myxobolus squamalis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MXB_370

ATGAGAAATATCTTGATTACCTCTGCTCTGCCCTACGTTAACAATGTTCCTCACCTAGGAAATATTATAGGTAGCGTTTTAAGTGCAGATTGTTACGCTCGGTGCTACTATATTAAAATTAAACTGTGTAGGTATTGTCGTCTCAGAGGCTACCAAACTCTTTATATTTGCGGAACTGATGAATACGGAACAGCAACAGAAATAAAGGCTGTTGAAGAGGGTTTATCATGCGAAGATTTGTGCCAAAAATACCACAAAATACACGTGGATGTGTATAAGTGGTTCAACATTTCCTTCGATTATTTCGGTAGAACGTCTACAAAACAGCATACGATTATTGCTCAAGAAATTTTCTTAAATTTGTACAAAAATAATTTTCTTCAAGAAGACGTTATTGACCAATTTTTTTGTCAAAATTGCCAAAGATTTTTGGCCGATAGGTTCGTTGAGGGAACATGCCCATTTTGTTTATTTGAGGATGCACAAGGTGATCAATGTGATAATTGCGGGAAAATATTCAACTCGACAGAATTGAAAATGGCGAGATGCAAAATATGTAAACAACCACCAATAATACGTAGCTCTAAGCATTTATTTCTTGACTTGCCATCGATTGAACCTCGCCTTAAGGAATTTATAGATAAGGCACAAATAACTGCTAAGTACTCAGGAAAATGGAGTGCAAATGCAGTAGCCATTACCAATTCATGGATGAAAGATGGCCTCAAAAAACGATGTATCACGAGAGATCTTAAATGGGGAACACCTGTGCCCCTTAATGAATTTAAGGAAAAAGTTTTATATGTGTGGTTTGATGCCCCTATTGGATATATTTCAATTACTGCAAATTACACCCAACACTGGGAAAAATGGTGGAAAAATCCGTCAGTTAAACTGACCAATTTTATGGGGAAAGATAATGTTATATTTCATACCATAATTTTTCCTGCTACTTTAATTGCTGCACAGTGTGACTATATCTATTTAAATGACATTAGTAGTACTGAATATTTAAACTATGAAAAGGGAAAATTCTCAAAAAGTCGAGGCACGGGTGTGTTTGGCGATAACGCCATGGACACTCATATAAAATCGGACATATTTAGAATATATTTATTGGCAAATAGACCAGAAAGCCAGGACACTTCATTTATGTGGGAGGATCTTATTTCAAGAAATAATAATGAAATTATTAAAAATATTGGAAATTTTATAAATAGATGTTTATCGTTATTGTATCGAAAATTTGATGGAAAAATTCAAGAAATTAGCTTAACTATAACAGAATTTGCGTTAATTACCAAGATTGACAGTCTCTTACGCTTTTATGTAGATTCCATGGAGTTTCATAGATTTAGGGAGGCTTTTGCGTATTTGCTAGATGTATCTCATGCTGGAAATCAATATTTTCAGTTCACTAAACCTTGGGAATTAGATGAAAAAAATCCAGAAGAATGGTTTGATTTTGTCAATCCGAGCATTTATTTTACTCAAATTGATCCTAAATATGTGCAAGTTTTAAAAGACAAACATGGCGGTCAATCCGCAGATACCATTTCTAAAATCGTGTCAACTAACAATATTAATTGCACACCGATTGTTGCGCGTCTTCTAGGCTTAATAGTGAAAGGAGTAGAAGAAGACCCATCTTGGCTTGAAAAGGCCATTAAAAGTATGGCAAAAAAATTACGAAAAACTCGTCAATTAGAAGAATTTGAAAAAGTTTTACACACAAAAGATCCCCTTTCCAGGTGCATTACTATAACCAGATCTCTTGATGGGAGATTACAAATAGCGCATCGAAAAGTTCTGCCCCATGTTGCATACTGCCGAATATTTCGTTGGCCAGACTTACACTCCTATCATGAACTTAAATCTTTGGGAAATTGCGAATATAGTTTTCAACGAAAAAAAGATCTATTGTGTATCAATCCATACCATTATTATCGAGCTGAATTGCTGAATTGTTCACAATCACATTTCATGACAGATACAACGAAAATGTCTGGATTTTATCAAAACATCGATCCATATAAGCAACTTTACAGTGACATGCAAATGAATGGTATTGTCGTTAATACTACCATAGGGTTTTCAGAACAGCATCTCTTTAATAGTCCCATAATGGCACCTCTTAGTTTAATATGTGACTCCAGCAAAGATAATGTCATTGACCCAATTTATAAAATATTTTTAATTATACTGATTAATTTTTGTGATAATTTTACTCACCAAACTCATACCACTACTTTTTCTCCGCAAAAAAACTATGAAATGGAGAACATAACTCAAACACAGGCTGAAGTGGACAAATTGGTAGCTAATTCTATTCTTCCTGCTCTAAAAAAATATCTAATAAATAGTGTAAATTATGATAGTTATCATATTATTAATTATCAAACGTGTAAATACTGGTGTGCCGTCAATTATTACGAATACCACAAAAAAAGAGGAATCTCATACGCTTCAAATTCAAAAGTGATCAACATTGATTTTGGAACAGAAGAAATATCACCCAGTTGCTATGGCCTAAAATCTTTTAAAACATTAAATAAAAATGATGAGTTCACTCTTTTCAAAAGTTCACTAGGCAATTCGCTTAAATTAACTCATGGAGGAGGTGAAGTTATTATTGAGTGCTTGGCAAAGAGTGTAGCAGTATTTGTATGCAGTTCAAACTTCAACCTTAAAAATAACAAACCATATAATAGTGTTCATCGATTAGAAAGAGGCGATACCATTACTGTAAAAATAATAATAATTGATATTGAGGTGTTTGACTATCATGATTTTGCTCCATTGTTGGCAAGATGCATTGCTCATAGCTATGAGGCTGTATATCGATTGCTTTCATGGACTATAATTCGTGTAAGCTTTATCAAAGGTTGGGGACCGAATTTCAAGCGTCAATCACCAGACGATACCCCCATGTGGTTCGAAATTAAGCTCATTGGCCCTATGAATTGGTTGGATAGAATTATACGACAATTGGTCTCCCCTGCGTCTAAATGCTCCAGCATC

Transcript

rna-gnl|WGS:QWKW|scaffold_158-snap-0.8-mRNA

ATGAGAAATATCTTGATTACCTCTGCTCTGCCCTACGTTAACAATGTTCCTCACCTAGGAAATATTATAGGTAGCGTTTTAAGTGCAGATTGTTACGCTCGGTGCtactatattaaaattaaactgtGTAGGTATTGTCGTCTCAGAGGCTACCAAACTCTTTATATTTGCGGAACTGATGAATACGGAACAGCAACAGAAATAAAGGCTGTTGAAGAGGGTTTATCATGCGAAGATTTGTGCCAAAAATACCACAAAATACACGTGGATGTGTATAAGTGGTTCAACATTTCCTTCGATTATTTCGGTAGAACGTCTACAAAACAGCATACGAtTATTGCTCaagaaattttcttaaatttgtacaaaaataattttcttcaagAAGACGTTATtgaccaatttttttgtcaaaattgCCAAAGatttttggCCGATAGGTTCGTTGAGGGAACATGCccattttgtttatttgaGGATGCACAAGGTGATCAATGTGATAATTGCGGGAAAATATTCAACTCGACAGAATTGAaaATGGCGAGATGCAAAATATGTAAACAACCACCAATAATACGTAGCTCTAAGCATTTATTTCTTGACTTGCCATCgATTGAACCTCGCCTTAAGGAATTTATAGATAAGGCACAAATAACTGCTAAGTACTCAGGAAAATGGAGTGCAAATGCAGTAGCCATTACCAATTCATGGATGAAAGATGGCCTCAAAAAACGATGTATCACGAGAGATCTTAAATGGGGAACACCTGTGCCCCTTAATGAATTTAAGGAAAAAGTTTTATATGTGTGGTTTGATGCCCCTATTggatatatttcaattactGCAAATTACACCCAACACTGGGAAAAATGGTGGAAAAATCCGTCAGTTAAACTGACCAATTTTATGGGGAAAGATAATGTTATATTTCATACCATAATTTTTCCTGCTACTTTAATTGCTGCACAGTGTGActatatctatttaaatgaCATTAGTAGTACTGaatatttaaactatGAAAAGGGAAAATTCTCAAAAAGTCGAGGCACGGGTGTGTTTGGCGATAACGCCATGGACACTCATATAAAATCGGacatatttagaatatatttattggcAAATAGACCAGAAAGCCAGGACACTTCATTTATGTGGGAGGATCttatttcaagaaataataatgaaattattaaaaatattggaaattttataaatagATGTTTATCGTTATTGTATCGAAAATTTGATggaaaaattcaagaaattaGCTTAACTATAACAGAATTTGCGTTAATTACCAAGATTGACAGTCTCTTACGCTTTTATGTAGATTCCATGGAGTTTCATAGATTTAGGGAGGCTTTTGCGTATTTGCTAGATGTATCTCATGCTggaaatcaatattttcagttCACTAAACCTTGGGaattagatgaaaaaaatccagAAGAATGGTTTGATTTTGTCAATCCGAGCATTTATTTTACTCAAATTGATCCTAAATATGTGCAAGTTTTAAAAGACAAACATGGCGGTCAATCCGCAGATACCATTTCTAAAATCGTGTCAACTAACAATATTAATTGCACACCGATTGTTGCGCGTCTTCTAGGCTTAATAGTGAAAGGAGTAGAAGAAGACCCATCTTGGCTTGAAAAGGCCATTAAAAGTatggcaaaaaaattacgaaaaACTCGTCAATTAgaagaatttgaaaaagtttTACACACAAAAGATCCCCTTTCCAGGTGCATTACTATAACCAGATCTCTTGATGGGAGATTACAAATAGCGCATCGAAAAGTTCTGCCCCATGTTGCATACTGCCGAATATTTCGTTGGCCAGACTTACACTCCTATCATGAACTTAAATCTTTGGGAAATTGCGAATATAGTTTTCAACGAAAAAAAGATCTATTGTGTATCAATCCATACCATTATTATCGAGCTGAATTGCTGAATTGTTCACAATCACATTTCATGACAGATACAACGAAAATGTCTGGATTTTATCAAAACATCGATCCATATAAGCAACTTTACAGTGACATGCAAATGAATGGTATTGTCGTTAATACTACCATAGGGTTTTCAGAACAGCATCTCTTTAATAGTCCCATAATGGCACCTCTTAGTTTAATATGTGACTCCAGCAAAGATAATGTCATTGACccaatttataaaatatttttaattatactgattaatttttgtgataattttACTCACCAAACTCATACCACTACTTTTTCTCCGCAAAAAAACTATGAAATGGAGAACATAACTCAAACACAGGCTGAAGTGGACAAATTGGTAGCTAATTCTATTCTTCCTgctctaaaaaaatatctaataaatAGTGTAAATTATGATAGTTatcatattattaattatcaaaCGTGTAAATACTGGTGTGCCGTCAATTATTACGAATACCACAAAAAAAGAGGAATCTCATACGCTTCAAATTCAAAAGTGATCAACATTGATTTTGGAACAGAAGAAATATCACCCAGTTGCTATGGcctaaaatcttttaaaacattaaataaaaatgatgagTTCACTCTTTTCAAAAGTTCACTAGGCAATTCGCTTAAATTAACTCATGGAGGAGGTGAAGTTATTATTGAGTGCTTGGCAAAGAGTGTAGCAGTATTTGTATGCAGTTCAAACTTCAaccttaaaaataacaaaccATATAATAGTGTTCATCGATTAGAAAGAGGCGATACCATtactgtaaaaataataataattgatattgAGGTGTTTGACTATCATGATTTTGCTCCATTGTTGGCAAGATGCATTGCTCATAGCTATGAGGCTGTATATCGATTGCTTTCATGGACTATAATTCGTGTAAGCTTTATCAAAGGTTGGGGACCGAATTTCAAGCGTCAATCACCAGACGATACCCCCATGTGGTTCGAAATTAAGCTCATTGGCCCTATGAATTGGTTGGATAGAATTATACGACAATTGGTCTCCCCTGCGTCTAAATGCTCCAGCATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PF21	Methionine--tRNA ligase, cytoplasmic OS=Xenopus laevis OX=8355 GN=mars1 PE=2 SV=1
Q54X95	Probable methionine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=metS PE=3 SV=1
Q2T9L8	Methionine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=MARS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03166 all species →	MH2	MH2 domain	Family	Interproscan
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR023458 all species →	Family	Methionine-tRNA ligase, type 1	Interproscan
IPR036578 all species →	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR029038 all species →	Homologous_superfamily	Methionyl-tRNA synthetase, Zn-domain	Interproscan
IPR033911 all species →	Domain	Methioninyl-tRNA synthetase core domain	Interproscan
IPR013019 all species →	Domain	MAD homology, MH1	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR014758 all species →	Family	Methionyl-tRNA synthetase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45765 all species →	METHIONINE--TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0004825 all species →	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006431 all species →	Biological Process	methionyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAF1745244.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Myxobolus squamalis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Myxobolus squamalis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →