Genomic Location: scaffold_571:4610...6742
NR annotation: KAF1745398.1, hypothetical protein MXB_3697, partial [Myxobolus squamalis]
| CDS | ||||
| MXB_3697 | ||||
| Transcript |
| rna-gnl|WGS:QWKW|scaffold_571-snap-0.13-mRNA |
| Protein |
| KAF1745398.1 |
| Uniprot term | Description |
|---|---|
| Q652P4 | Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0569400 PE=2 SV=1 |
| Q9LKF9 | Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CPSF100 PE=1 SV=2 |
| O74740 | Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cft2 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07521 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF13299 | CPSF100_C | Cleavage and polyadenylation factor 2 C-terminal | Family | Interproscan |
| PF16661 | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | Domain | Interproscan |
| PF10996 | Beta-Casp | Beta-Casp domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036866 | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| IPR027075 | Family | Cleavage and polyadenylation specificity factor subunit 2 | Interproscan |
| IPR022712 | Domain | Beta-Casp domain | Interproscan |
| IPR011108 | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| IPR025069 | Domain | Cleavage and polyadenylation specificity factor 2, C-terminal | Interproscan |
| IPR001279 | Domain | Metallo-beta-lactamase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45922 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005847 | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0006398 | Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | Interproscan |
| GO:0098789 | Biological Process | obsolete pre-mRNA cleavage required for polyadenylation | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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