Detailed information of KAF1745416.1 in Myxobolus squamalis

Genomic Location: scaffold_94:567...6268
NR annotation: KAF1745416.1, hypothetical protein MXB_5057 [Myxobolus squamalis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5ZI08Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
Q5R405Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1
O00267Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04053Coatomer_WDADCoatomer WD associated region RepeatInterproscan
PF03439Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR006692DomainCoatomer, WD associated regionInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR005824DomainKOWInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR005100DomainNGN domainInterproscan
IPR039659FamilyTranscription elongation factor SPT5Interproscan
IPR041976DomainSpt5, KOW domain repeat 3Interproscan
IPR041977DomainSpt5, KOW domain repeat 4Interproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR039385DomainNGN domain, eukaryoticInterproscan
IPR006645DomainNusG-like, N-terminalInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036735Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR041978DomainSpt5, KOW domain repeat 5Interproscan
IPR041973DomainSpt5, KOW domain repeat 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11125SUPPRESSOR OF TY 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0006354Biological ProcessDNA-templated transcription elongationInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

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