Detailed information of KAF1745548.1 in Myxobolus squamalis

Genomic Location: scaffold_69:1027...1896
NR annotation: KAF1745548.1, hypothetical protein MXB_4001 [Myxobolus squamalis]
Species Myxobolus squamalis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P18238ADP,ATP carrier protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=AAC3 PE=1 SV=1
Q09188ADP,ATP carrier protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=anc1 PE=1 SV=1
P02723ADP,ATP carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aac PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002791 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00153
all species →
Mito_carrMitochondrial carrier proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002067
all species →
FamilyMitochondrial carrier proteinInterproscan
IPR023395
all species →
Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR002113
all species →
FamilyADP/ATP carrier protein, eukaryotic typeInterproscan
IPR018108
all species →
RepeatMitochondrial substrate/solute carrierInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45635
all species →
ADP,ATP CARRIER PROTEIN 1-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005471
all species →
Molecular FunctionATP:ADP antiporter activityInterproscan
GO:0005743
all species →
Cellular Componentmitochondrial inner membraneInterproscan
GO:0140021
all species →
Biological Processmitochondrial ADP transmembrane transportInterproscan
GO:1901029
all species →
Biological Processnegative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathwayInterproscan
GO:1990544
all species →
Biological Processmitochondrial ATP transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05863SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Myxobolus squamalis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Myxobolus squamalis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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