Gene detail

Detailed information of KAJ7325628.1 in Desmophyllum pertusum

Genomic Location: MU827807.1:314631...348528
NR annotation: KAJ7325628.1, putative E3 ubiquitin-protein ligase herc4 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7325628.1

ATGTTCTGTTGGGGTAAAAGCTCAGAAGGCCAGCTAGGTCTGGGGGCAACTGACGACGAACCAGTTTTGTCCCCGAGAAATGTCGAGGACACTTTTGGAAATGTGGCAGAAATAAAAGACATTGTTTGTGGCTGGGATCACACAGCGGTCTTAAAAGAGGACGGTGTTGTTTATACATGTGGAAGTAACGAACATGGCCAGCTTGGGCATCATAAAGAGGCAAAAATACTCGCACGTGTCGATGCACTTGAAACTCGCACTATCAAGCAAGTGGCGTGTGGACAGATGCACACTTTAGCTGTCACAGATAACGGGCTTGTGCTCGCCTGGGGTGACAACACCAAGGGACAACTGGGCCTGGGGAACACTGAAAATAATGTTCAAAGTCATCCAAGAATGGTAAAGAACCTTCAATCTGCTGGTTTGATGGTAACTCAAGTGGCTTGTGGAGCTAGACATTCTCTGGCGCTTACAACAGGTGGATTCTTGTTTTCCTGGGGTGACAATAAGAATGGCCAGCTTGGTATCGGCAACTCAAGCCCAGTCCACTACCTGCCAGAACATGTGTCATCTTTGTTGGGAGTACCCTTTGCCTTGTTATGTGCTGGAGGATATCACAGCTTTGCACTGTCTCTTTCTGGGGCATTGTTCAGCTGGGGAAGAAACAACTTTGGCCAACTTGGAGTCATTGACAACAAAGATCGTTTTATGCCTGAACTGCTCAAGAGTTTAAGATCTCAGAGAGTAAGACATGTAACTGCAGGGGAGTATCATACAGCTATCTTAACAGAGGATGGAGGAGTGTTTACATTTGGCTGCGGTAGTTATGGACAACTTGGACATGACTCTAACAATCACGAGTGTAACCCTAGAAAGGTGGTTGAGTTAATGGGAAAAATTGTGACTCAAGTTGCATGTGGAAGGCTCCACACCTTGGCTTATGTTGCATCATCAGAAAAGCTGTACTCCTTTGGTTCAGGAGATAATGGCCAACTGGGTAACAATCAAGTCATCACTGTCAATAGCCCTGTTGCCGTTGCCAACAGTTGGGTGGCTAATGACGCTATGCGAACTAACTCAGTGGGTCACTGCGTGGTCCACAGGATCGCTACTGGTGGTGACCACTGTTATGTTCTTGCATCAAAAAATGATGATTGGGTTCCCTGTGATCTACGAATGCAAGACTCTTCTAAGCACCTGTGGACTTTGTCAGAGTCCAGTGTCAAGGAATTGGTTCAGCAGTTGTCACTACCCAATCCAGCATTAACAGAGATTGTTCATAAATTAGAGACAGTGTTGTCATCTACAGCTAGTTTGAATGGATCATTTTTGGACAGACAAAACCATGAAAAAACAAGCTCTAGAATTCATGGTGTTCATCTAGCTTCCGCAAGAAGAGCCTTTGGTCTTCTTACTTGTATAAAACACCAGGCAATAGTTAACAAGATATTTGCTGCAATTAAACAAGGAGTCATTCACTCTCTACTTCAGCCTCCTCCTGATATCGAAGCTCTCAGAGTTTATCTACTTATCCCTGAATGCTCTGTCTATCAAAGGGCAGAAGAACACTTTGATACTATTGTCATTCCATTTAGTGAAGCAATCTTGAGATTAACAGCTGATGCTGGCAAGATGTTTCAAGACTGTGTGAAGTATATAATACATTTCCCTGCACCAAAGGTTGCCGATGAGGAGGCCAGAAGACGGCATACAGCCCTTCGTACATGTTTAGATGTTTTAGAGCAGCTTAATGTGGTTAATACAGAGTCTGGTGACATTGTACCATTTAATCAATTCTACATTCCTGAGATACAAGCAACCTTTGATATCAGAGCCGACTACTACAACTGGATTCAAAATGAGCAAAATTTGTCATTCTGTCGCTACCCATTTGTCTACGATGCTGAAGCCAAAACAAGACTGCTCCAAGCAGATGCTGTAATGCAAATGCAAAGTGCTGTGGAAGAAGTGAGTCGCCGCAACGTGCAGTCGATGATGTCTCCGTTGCCGATTAACCAAGTCAATCCAGTACTGTTATTAGTGGTGAAGAGAGAGAGTATTGTTGACAACACCCTTACTCAGATCATGAGATGTGGTCCGTATGACTTGAAAAAACCACTCAAGGTTGTGTTCATGGGCGAGGAGGGAGTAGATGCTGGTGGTGTTAAGAAGGAATTTTTCTTACTGCTTCTGACTGAGATCTTGGACCCAAAATACGGCATGTTTACCTACATTGAAGAGTCTCAGACGATCTGGTTTAACAATCAGACGTTTGAAGAGAGTCCAATGTTCTTGTTGATTGGTGTCATTTGTGGACTGGCTATCTACAACTCCATGATCATTGATCTCAGATTTCCTCCTGTTTTGTACAAGAAACTCTTAGGCAGGAAACCAATTCTTGAAGACTTCAGAGGTTTTAAACCCGTAGTTACAAGAAATCTTGAGTATTTGCTGGAATACAGTGATGAAGAAGACATCACAGAAACGTTTGGACTCAACTTTCAGATTGTCCGCGAGAAATACGGCGCACTGGAATACATTGATTTGATTCCAGACGGAGGGAACACTGCAGTCACACGTGAAAACAGAGAGCAGTATGTGGATGTGTATATAGATTACTACTTGAATAAATCAGTAGAGAAACAGTTTGAGGCGTTTGCTACAGGATTTCACCGTGTGTGTGGTGGTAAAGTTTTGGATTTTTTTCATCCTGAGGAGCTTATGCAGATGGTGGTTGGATGTCAAGATTATGATTTCAGAGAGCTTGAAAAGGCTGCTGAATACAAGGGAGAATATTACAAGCATCACCCTGTTATCAGAAACTTCTGGGAAGTATTCTTTGAATTTACTATGGTCATGAAGAAAAATTCCTTGATCATAATTCAGCCTGTGGTGGGTGGTAAGCGCGGAGATCACCTCCCTGTGGCTCATACTTGCTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PAV2	Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus OX=10090 GN=Herc4 PE=1 SV=2
Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus OX=10116 GN=Herc4 PE=2 SV=1
Q5GLZ8	Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens OX=9606 GN=HERC4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002968 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF13540 all species →	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051709 all species →	Family	Ubiquitin ligases and GTPase regulators	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45622 all species →	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10615	HERC4; E3 ubiquitin-protein ligase HERC4	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.