Gene detail

Detailed information of KAJ7333757.1 in Desmophyllum pertusum

Genomic Location: MU827785.1:1151678...1172281
NR annotation: KAJ7333757.1, Elongator subunit [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7333757.1

ATGGGAAAGAACCGAAAGAAAGTGAATCCCAATGCTTCTAGAGCTGAGTTGATGATGATGACAGTGTCAGATATTGTGAGTCAGTTGATTACAGCACATGAGAAAGGGAATGATGTTAATCTCAACAAAATAAAAGGACAAGCAGCCAGTAAATATGGACTGGCATCACAACCAAGACTGGTTGATATCATTGCCGCTGTACCTCATGCCTATAAAAAGGTATTACTGCCAAAGTTAAAAGCCAAACCAGTGAGGACAGCTTCTGGAATTGCAGTTGTTGCTGTTATGTGCAAACCTCACAGATGTCCACATATTAACATGACTGGCAATATTTGTGTGTATTGCCCAGGAGGTCCAGACTCGGATTTTGAATACTCCACCCAGTCCTACACTGGATATGAACCCACATCAATGAGAGCCATCCGAGCAAGATACAATCCTTATTTACAAACAAGGCATAGGGTTGATCAGCTTAAGCAGCTGGGCCACAGTGTGGATAAGGTTGAGTTCATCGTAATGGGAGGCACATTCATGTGTCTCGATGAAAGCTACAGGGATTTCTTCATCAGGAATCTTCATGACGCACTCTCGGGTCACACAAGTAACAATGTGGATGAAGCTGTTAAATACTCGGAGAGAAGCAAGACAAAGTGTATTGGAATCACCATTGAAACTCGACCAGACTACTGTCTGAGAAGACATTTAAGTTCCATGCTGATGTATGGCTGTACTCGTCTGGAGATTGGTGTACAAAGTGTGTATGAAGATGTTGCGAGAGATACTAACAGAGGCCACACGGTCAGAGCAGTGTGTGAGTCATTCCAGATGTCCAAAGATGCAGGCTTCAAGGTTGTATCACATCTGATGCCCGATCTACCAAATGTGGGATTAGAAAGAGACATTGAATCGTTCATTGAATTCTTTGAAAATCCTGCGTTTCGTGCAGATGGTTTAAAAATTTACCCAACCTTGGTAATCCGTGGTACAGGTTTGTATGAACTGTGGAAGACTGGACGCTACAAGAGCTATCCTCCCAATACATTGGTGGATTTGATCGCCAGGATTCTCGCATTAGTACCACCCTGGACACGAGTCTACAGAGTTCAAAGGGATATCCCCATGCCCCTGGTGAGTTCTGGCGTGGAACACGGTAATTTAAGAGAACTGGCACTAGCGCGTATGAAGGATCTGGGAACACAGTGCCGTGATGTTCGCACACGTGAGGTTGGAATACAGGAGATTCACAATAAAGTTCGACCTTTTGAAATTGAACTCATTCGTCGTGATTATGTGGCAAATGGTGGATGGGAAACGTTTCTGTCCTATGAAGATCCGGAGCAAGATATCTTTTTTTCTATGTCATTGTACACAGCAATCACATCACTCCACAAAATGCTTGTTGCTTTTCTCCTTTTTATGCTTTTATTTGATAGTCAAATTATTCATTGGACCACGAAATGTTCAGAGGCGACCTTCAGACCTGAGCTAAAGGGAGCCTGTTCAGTTGTCAGAGAACTTCATGTCTACGGTAGTGTGGTTCCTGTCAGCGGTCGTGATCCATCCAAATTTCAGCATCAAGGTTTTGGAATGTTGTTAATGGAGGAAGCAGAGAGAATCGCCCGTGATGAGCATGGATCTCTAAAAATCGCCGTTATTTCAGGAGTTGGAACTCGGAATTATTATCGTAAAATTGGTTACGAATTGGAAGCGTGGATTGTTATCGTGTCCTCAAGACATATTCAGAATTCTGAACCTGATGCTTCAAAGTCTGGGAAACCAGGCGAGTATTTATGGTACAAGACTGGGTCGAAACCACAAACCGAACGAAAAGTTGCAAAGAGTTTCATAGCTAAAGTATCCGCACACGACAAGGTAGATAAACAGCCCACAGTTGATTCTGATGAAGATCAAGAGTTAAATAGTGGTGCTATTCCCAATTACGAGGAGAAAGATCTTAGTGGAAGTGGAGAACCTAATGAAGAATACATGTCGGGCAGTGGAAGCTATCCAACTAGTTACATGGTGGATATTGACGCTGAAACTGGCACAAACAATCCTGTTGAGCCTGACAGCGATACACCAACCGAGGACCTGGCAACTTCTGGACAAGACAAACAAGAAGAGGAAAATGCCGATTTTTCAGGAGAGAACAAAGATGAAGATGCAGGAAAAGAAGCCGAAAATTCAGAGCAAGTGAAAGCACAAGATAACAGTGGCAGCGGTAATGTCGAACAAGAAGATGAAAATGATGAGGATACAGACAGGAATGAAAAGGTGAAAATTGTGTCACCTGCTGTGGCAGAACATGTGGCAAGCCCTGCACATAGAAGAAGTGGCATTTCTAAGAAAAGCAAGGATACTAAGGGAAATAGCGAAAGTGAGTATGATAAGCTCTTCAAAGATTTCAAAAACGATGGGGATTTGGGGCTGCAAGATGATGATGATGGCGACTTTAATGACAACCTCAGTGACGAGGAAACAAAGCAGTTGGTCTCTGAAGGAAACAAAGAGGAACCAGGAAGGAGTAAGAGTGCGATAACTCGCCATGGCAAAGAAGGAGAAAATTTGTCTTCGATGTTTCAAGATTTCTCTGATGATAGTAACAACAGCCCGCCATCAGAAGACGAATCTCGAGATGTTAAACTGACGAAGCTCAAGAAAAACATTCACGGCTCCAAAATGAAAGAGATCCTCTCCAAGCTTGATAGTGATATTTTCAGAGGAAAACACAGCAAAGAGCATGTACAGCACCACAGTAAAAAACATCGAGATTATCATAAACATCATCATCATCAACAACAACATAATAATAATAATAATGAAACAACCAATAATAATGAAACAACCAATGCGGACACATCACGGGCACTCAGTCACCACGCCGACGATGGAATCTTTAATGGCAGTGTTAGCAACGTGACACTGGAAGCACAAAAGGTAAAGCAACAACAACATCATAAGCAAAAACATTATCATCATCACCATCATCACCATCATCATCGTCATCAACATCAAATTGACATCGAGGCACACAAGGACAATATCAGTGAAAACGTAATCCCAGAAGAGCATCTCCAGAACCACTCCGACGCGTCTTATCCTTTTCCTTCGTCTGGCCCTGTTGTAAACGCGGAAGCATCACAGATCCAGCCCTACCCAGAGGAAATGTCACTTTATCAGATTTACCAGCAACCCACAAATGGTTATGAGTACCATGCGGTGAAATACGCTGACAGCGTAGGGGCCGTTTGCCTTGATGGCTCCACTCCTGGCTACTATTTGAGGAAAGGATCCGGTGAAGGAAGCAATAAGTGGATTATTTACCTGCAAGGTGGAGCATGGTGTGATAGTAAGGAAACTTGTTTGGGTAGAAGTCGCATGCATTTGGGTTCTTCACTCTTCTACAAGCCTCTTGGAAATCCTGGTGGAATTTTATCAAACAACATTAAACTGAATCCCAAATTCCACAACTGGAATGTTGCTTACCTTCCCTATTGTGACGGTTCGTCATTTTCGGGCAACAGATCTGACCCAGTGGAGGTTGAAGGCACCTTACTCTATTTTAGAGGATTTAGAATTTTGGACACTACCATATCGGAATTATTATCGGACATGGGTTTACAGCAAGCCGAACGTGTTGTCTTTTCTGGTACCTCAGCAGGAGGACTAGCGGTTATGCTTCATGCCGACTTTGTCCGTTCTAAACTACCCAATACAGTTCACTTCCGAGCCCTGGCTGATTCAGGATTTTTTCTCGATACAGCTTCACGGAAAACGAAAGGACAACGGGATCGTAAATTCAGGAAGACGATGCAGAATGTTTTTAAGCTGCACGACTGCACGGATGGGGTTCCAAAAAGTTGCGTCGACGACAAGTCCGGCAAAAAGCTTTGGAAATGCATCTTTCCACAATACTTTCTAAACTATGTTAAGAGTCCTCTGTTCATTGTGAATCCTTTGTACGACTCATGGCAGCTTGGACACATCTGGGAAATCCCATGCGCTTCTAAGCCGTACTCATGTACAAAGAAGGAAGTAAAGCAGATCAAGAAATTCCGAAAAACCACCATGAAAGCCTTGAAGCGTGTGGTGTTGGGGTCACCAAACATCGCACTGTTCGCGGATTCATGTATGGATCATGGCCAAGTGATCAATGCCCAGTGGAACTCCATAAAGGTCATGCACAAGTCCATATCGTGGTCATTTGCTAAGTGGTGCGATGAGTCGCATAGCAAGGATGAAGTCGAGTACTTTATTGATGAGGATGACTATCCAGCTAATCCAACCTGCATCACTAAGGATCTTGACAAGAGATCAGAAATCTTTACAGAAGGATTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZM6	Elongator complex protein 3 OS=Xenopus laevis OX=8355 GN=elp3 PE=1 SV=1
Q6NVL5	Elongator complex protein 3 OS=Xenopus tropicalis OX=8364 GN=elp3 PE=2 SV=1
Q5ZHS1	Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004622 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03283 all species →	PAE	Pectinacetylesterase	Family	Interproscan
PF16199 all species →	Radical_SAM_C	Radical_SAM C-terminal domain	Family	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004963 all species →	Family	Pectinacetylesterase/NOTUM	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR032432 all species →	Domain	Radical SAM, C-terminal extension	Interproscan
IPR039661 all species →	Family	ELP3/YhcC	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR034687 all species →	Family	Elongator complex protein 3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11135 all species →	HISTONE ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0002926 all species →	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7333757.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.