Gene detail

Detailed information of KAJ7334456.1 in Desmophyllum pertusum

Genomic Location: MU827784.1:1379405...1397402
NR annotation: KAJ7334456.1, DNA (cytosine-5)-methyltransferase 1 [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7334456.1

ATGAATAAATCTAAATTGGGAAAAGAGAACAAGAGACAGCGTGGTATTAAAGAGATGTTTACCAAAGGCTCTGTGAAAAGAAAGAACACAGAGGACAGCAATGAAGGATGCAGCAAGAGTGATGGGGAGTCATCATCGCATAGTGGTGAAAACAACGGCATTAGTAAAGATAGCAAACGTCAGAAGGTGTCTGATGATGATGGTAATGACGAAGGAGAAAAGGGATCAGTGGAGACAGAAGGAGAAAGGTATAACATCAGAGAATCCTCTGAGGGAACAAAGTCTGAGGAGAAAAAATCACAGCCTCCTGCCAAGTGTAAGGAATGTAAACAACTGCTGGACAGTCCTGACTTGAGACTCTTCCTTGGTAGCAGTGATGACGCAGTGGAAGAGTTTGTTGCTCTAACTGACCCACGCTTATCACTTTTCTCTGGAGAGGAGGAACAGTTTGATAGCTATAATGACAGACCACAACACAAAATCACAAATTTCAGCATCTACGACAAGAACACTCACCTCTGTCCATTTGACTCAGGCTTGATAGAGAAGAATATTGAACTGTTCTTCAGTGGATACCTCAAACCAATTTATGATGAGAATCCGAGTCCTGAAGGTGGTGTTCCAGTAAAGTCTATAGGACCTATAAATGAATGGTGGGTTGCAGGATTTGATGGAGGAGAGAATGCTCTCATTGGTTTCACTACAGCTTTTGCAGAGTATATATTGATGCAGGCTTCAGAGGAGTATATGCCATTTATGAACATTATGAAAGAGAAGATAGCCATGAGCAAGATTGTGATTGAGTTTATACAGTGTAACCCTGAGGCAAGATATGAGGATTTGTTAAATAAAGTCCAGACTTCTGTGCCACCAGAAAGCTGTTCCACATTTACTGAAGATACACTGTTACGGCATGCACAGTTTCTTGTTGAACAGGTGGAAAGCTATGACCAGGCAGCAGATGACGATGAGCTCCCTCTGCTAGTGTCGCCATGCATGAGAGATCTCATCAAGCTTGCTGGAGTAACACTTGGAAAAAGGCGTGCTGCAAGGGGAGTCAAAGTCAGACTGGACAGGAAGAAGAAAGACGCTGCTCCATCCAAAGCCACCACCACCCCCCTAGTTCGGAACATATTTGACATTTTCTTCAAGGATCAAATTGATGGTAAAGAAATAAGTGCCCCTCGCAGAAAGCGATGTGGTGTGTGCGAGGTTTGCCAGCAGCCGGACTGTGGCAAGTGTAAATCCTGCAGGGATATGATCAAGTTTGGTGGAACTGGGAAAAAGAAGCAGTGCTGCGAAGCAAGAAGGTGTCCTTACATGGCTGTGCAAGAAGCAGAAGAGGATGAAGATGTTGCTGAAGAAAATGCAGAAATAGAGAACATGAGCCCCAACAAAGAGAAAGGAAAGATGAAATCAGCAACACACAAAACAGCAAAATCACAGAAAGTGATTAAGACCAAGGTTGAGTGGATAGGAGATCCCATTAAAGTCAGTGGAAAGAAAAAGTATTATGCAACAGTTCTTATCAACAACAAAGAGGAGATAAACATTGGAGATTTTGTGAAGGTGCGTCCTGATGACCCTCACATGCCGCTGTTCATTTCCTGTGTGTGCTACATGTGGGAAAGAGCAAACGGCAACAAGATGTTTCACTGCAGATGGTTAAGTCGTGGCTCAGATACTATTTTGGGTGAAACAAGCGATGAAACTGAATTGTTCCTGGTGGATGAATGTGATGACAATCCCCTTGGCTCAATTGTACAGAAATGTACTGTGACACCCAAGCTGCCTGATGCTGATTGGTTCATGAAGGAGAATGTGATGATCAAGAGGCTGACAGTACAATGGAGGAGGATGATGGAAACACGTTTTTCTATCAAAAGTGTTCACAAGTTACCCATTGAGTGTCTAATTGTTTATAGGTATGATCCTGATCCTGGCAGATTTACAGATCCCCCCTCCGAGTACACAACTACTGTGGACAGGACAGAAAATTGTAAATACTGTGAGAGCTGTGTACGCAAAACAGCACAAGAACAGCTGGAAACACCATCAATAGGAGAGTCAGTGGAAATGGATACAAAGTCCTCCTCTAAGAAATATTACAAATCCTGCACAAAAAGTGGCATTCAATACAAACTGGGAGATTGTGTTTTCCTCACGTCCAGAGGCATTTTCATTCAAGTTGATGAGGAGGTTTATCCAGAATACTACAGAAAGCCTTTGGAGTATGTGAAGGGAAGTAACCATGATGTACCACAACCATTCAAAATAGGTCGAATTGTTAACATCTTCACAAGATCGAGCTCAGGAAAGCTAACGGAAGAACTGGACTTTGTGCTCACTGTCAACAAATCTACAGAGGCAACTGTTGCCATTGACGATGTGTTAGGTGCGTGTGTCGTGACATGTGGAGAGGATCTTAACTGCTCAGTTGAAGAGTACACTGCAGAGGAATCAACTATTTTTACTTCTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27746	DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus OX=7656 GN=DNMT PE=2 SV=1
Q92072	DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus OX=9031 GN=DNMT1 PE=1 SV=1
Q24K09	DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus OX=9913 GN=DNMT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003199 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12047 all species →	DNMT1-RFD	Cytosine specific DNA methyltransferase replication foci domain	Domain	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR022702 all species →	Domain	DNA (cytosine-5)-methyltransferase 1, replication foci domain	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR050390 all species →	Family	DNA Cytosine-5 Methyltransferase	Interproscan
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10629 all species →	CYTOSINE-SPECIFIC METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7334456.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.