Gene detail

Detailed information of KAJ7337208.1 in Desmophyllum pertusum

Genomic Location: MU827781.1:2388862...2422904
NR annotation: KAJ7337208.1, hypothetical protein OS493_010065 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7337208.1

ATGGCAAGGATCAGCATTTTGTGGCTGTTAGGCTTATTTATACAGTTGACTTTCTGCGTTGATGCGAGTGCACAGTTTGAAGATCCTTTGCAGCGACACATCTTTGATAATGATGACAATAAACATGACTTGAATGATGCGGAATTTGAAAAGATTCTCTTACAATACGATAAGAATGAAGATGGAGAGCTATCAGCTGAGGAAATGGAAAAGTATTTTCAGGATGCTATGGCCGCTTTACGAGGTGAAACTGGTGAAGACAAGCCACAAGAAAAACCAGGAAAAGGTTCAGCTAAGAGGACGAGTACAAAGCAGAAACGTCCAACAAGAACACAGCCATCAACTGTCAATACTGGATCCAAGTGGAGTGTAAAACAGATTGTCGGGGGTCTGTTAGGAATACTTTGTTTAATTATAGTGTGTGCGGCAGTAGTTCAGCGGATGACCAAACATGCAGGTGTTGATGTCGAGGATGTCCGTGCCGCACGTTTAAGAAGGCTGGCCACTGAACAACCCAAGACTAATGCAGAAAATTCAACACTTAAGTCACGTAGAAATGAAGTTTCTCCAGCAGTGAACAGGCCAGCAGTCATTTCCAGTGATAAGCCAACCATTAGAAGAAGGTTGAATGACAAAAGTGAGGCATCTAAAGGTAACACAGATGAGGCAGGAGTCTCAGGAACTGGCAAAAGATTAGACAAGTCAAGACTGTTAAATCCAAGTGTTGAGAGGACAGAGGACTGTCAAGTTGAGCCTCAGTTGTTCAATGCAACAGCGAAACCACTTGCTTCCGTTGATCGGGTGGCAGCTGCCTCGGTTAGAGCTACTTCCCCAGAGAGGTGTCCAGTTACAACGGCAGTTGGTGCAAGCGGCATGTCTTGTGATCAAAGAGTGGTAGCAGATAATTTTGGTGTGATAGAGACAGCAGATGTACAGGAAGAAGTTTTGGCATCCTCACCTCGGAAGCTCCCAGCACCCAAGCAAGAAAAGTTACAGGACCTACCATATGAAGATGTGGCGAGGAAGGTGTTGACAAAGGTTTTGGATTGTTCTTTTGAAAATCAAGTTTCCAAGAAGAATGAAGGCCTTCCACTAATCAAGCTTGGAAAAGAAAAAGGGCAAGCAGTTTTACAAATTGAGGCATCTGAAATACCTGTCAATAGTGATGACTTAAGCAAGCTAGAAAAACTTCTTGCTAAAAGGATCTATAAAGAAGTGGATCCAATGAAGTTTGCAATTCTGTGCTTTGATCACTGCTCGCAGCTACCAGGAAAGAACTTTAAAACAATTCATGATGGAGGAAAGATTTGGAAAGAAGTGACATCAGCTGTTATGGAGCTATGTGTGAATACAGTTCTTAAGCATCTTATACATGCTGCGGCAAGTCCTACTGCAGCTGAAGATGACTTGTGGGCAGACTTTGTCCAATCTGGCCAATCTGAAGCGCCATCTCAGTTTTTTCTGGCGAGTGTTGGAGGCTGGTCATGTGATGGTGTGACAGTGAGTGGTGATCTTCTTAGCAGACTGCTGGAGAAAGGCAAACATGATTCAGAAGTAAAAGACACTTTTGTTGAAATGATAACTGTTGGAGGAAGACAAGTCGTCCAAGTTAAGAGGATAAATGAGATAACTCTAGAGTGCAAGAGTATTTTCACAGGGCTGGAAACCCTTCTCTCTCAGCCTGCCATGGCTGAATTTCTTGCTGAAGCCCTTGAACGAGAATTGGACAGTGGAATAAAAGAACTGGGCATTTTCTTTCAAGAGAGGTCACTGTTCTCTTCATTCCTGGCGACATCTACGATAGATATAAAAATAGACATGAAGTCACGTGCTGCTTCTTGTTTCCTTGAGCTGCCTCACTTTCCTCAAGCATTTCGAAGTGACGTTGATCAACTTCAGTCTCAAATTATGGATGGCATCCATTCCTGTCAAAATGTCGTTTACAAGGCACTGGTGAAGTTGTTCAAATCCAATGCCAAGGACAGTGCGCTAGCATGGCTGGCCGGTGTTGTTTCACTCAATGATCTCAGGGTGTCAGCAAATTTACCCAGAGATAATTTTAAAACAACAGTGGCTGGTGATGGTTTTATGGTAAATCTGTGCTCAGTAGCTCTACAGCTTTGTGATTCATTTCTGCTGTCAAAAGGCAAAGGAAAATACAAACAGATAGAGGCGCGATACTGCACCACTAAAGGCTGTCGCTTGAGATTCGATAATGAACGGACGCTGGCTGGCGGACACATTGGTACAGAGAACGAGGAGAAAATCGATCTACGTAGTTTGCTGTTCTCTTCAGCAGAACTGAAAGGTCAGTTTAAGCTGATGACGGAGATGTTCCATATTACACACAGCGCTCTTCACATTGGACTCACCATCACCCTGCAACATTACAACAAACTCTTAAGTAATTTCTTCTTGATGGTTGAAATGAAGGAAGGTACTCCTGTAGAAGCGAACATAAGAAAACAGCTTATGCTGTTTGTACATCAGTGGGATACTTGTCTGCAGGACACACACTTTATGAGGCTGTGTTCAGAGTTTTACATCACAACCGCTGCTTGGCTTCTTCATCTTCTAGAAAGTTGTTCCTCGGAAAATCAGGGTTTGTCTGAAAATGAAATCCAAGTGAAACAACGCGAAATACTCGCGAATATTCCCGAGTTCTACGTGAAAGACATGTGTTCTTGGTTCAGATTTGCCGCTCTACACAAGCCTTGTGCACTCAAAGGATTGGACATCTGTGTGTTTGTTGATTGCTGTTGTGCTCTTATTGAGCGGCGAGACCTGATGCCTGGACCTGTGGCGTCCACGAGAATTGTTACAGCACTGTTATCATTTGCTGAAATATGCTCCAGAAATAAAAGGAAAAACAAACTGTTGGAGACAACAACGTGGGGAAGTGGCATTGAAGGTGACCTGATGGCCTGCGTTGCTATGTGTCCAGCGGTCAGAGAAAAACTCGGCCCAGCTCTAATTCATACGTACTCCTCGGTCGACGTTGTGGAGGGCCTGGACGTGGACAAAGAAGAGTTTGACAAATTTTCAGCCAGGTTTGAGATTGTTAAGTTGTTGGAAACCCTGTGGAACAGACCGGACTGCTTGCCTTCAATTTTGGAAGAGTGTGGAAGGGAGAGTTTTCAGGCATTCCTTGGCTCTGTACTAGACACGCTTCTTTACGTGTTAAAAGATGGTTTAATAAAAATTACACATGTGAGGAAATTACAGTGTGCCAAGCAATGTGATGAAAAGTGGAAAGAACTGAGCGCAGAACAGCGTCAAGAAAAGGAACAGTTTTTGAAGGGTGAAGAACATACGTCGAAATCCTTTATGGCGATGGCTAACTCAACGCTGGCATTTCTGGTGAAAATCACAGAAGAAGATAAAGTGGCCCGCTGTTTCTCGCGTTCTCCACTGTCACTCAGAGCATGTGCAGCGATAATCGGATTTTTGGATTCATTATGCGGCCGCAAATCCCTGGATTTGAAAGTCCAAAACATGGAGAAGTATTCATTTGATCCACGTGACCTGCTGGTTAAAATTCTAACAGTGTTAGTACGCATGTCAAATGCCAGCGAAGAGGGAGAGTTTGTTAAATGCCTCGCCGCTAACCCAGACTACAGCAGGCTCAGCGTGGAGCGAGCGTTGCATGTTGTTCAGCGAGAGAATCTCGCTCCAGATCACGTGGTTCAAGACTTGAGAAGAATTATGCAAGAGGTTGGCTCATTGTTAGCACGAGAAGAAGGCCACGCCTCCTCGGTTGAGGACGAATTAAACGAGGATGATACTGAACCTGCCCCGCCAGAGGTGATGCCTGTGGATGCAGATCAAGCTTATATTGACGCTCTTGAACTGATCAAGTTTGAAACCGCCGAACTGGTGGAATGTCACGCCTTTCGTAGCTTTGCCAGCAAACCTATCTGTCCCAGATCTGGTAAAGTGCGTGCTCTTATGCGAGAGGCAACTCAACTGAAAAATAACCTTCCGATTCATCCAAATGCTTCCATCCTTGTCAAACAGTCGGGCTGCTTCGTGTTTGATATCTACTTTCCGTCCTCGTATCCCGTTGATCCACCGCTGGTGAAAATTATCACCACTGGTAACGGCACTGTGAGGTTCAACCCGAATCTTTATGCAGACGGAAAGGTTTGTTTGAGTTTGTTGGGGACGTGGCACGGTGGAGATGCAAGTGAGAAATGGGATCCGAAGAAGTCTTCGCTTTACCAGGTTTTGGTGTCTATTCAAAGCATGATGTTTTCTCCTGAGCCTTATTTTAACGAGCCTGGTTATGAAGGCATCAGAGGAACCGACGACGGAGATGCTCTGTGCAATGAGTACAATGCAACAATCAAGCTGCAAACGATACGTCACGCCATGGTCGGACAGTTACGCGAACCAACACCGGGATTTGAAGAAGCTATCCGTGCTCACTTCCGTTTCCAAAGAGAGGCTGTATTGAAGCAGTGCGCTGAGTGGCTCACACAGTGCGCAGACGCTGAAGAAGAAAGACGCATGCGCAAATCCGTCGAGACATTGAAAAGTGAACTTGAAAAGTTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NR09	Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3
O88738	Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2
Q5UQ88	Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R521 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009035 (this species only)
Ubiquitin family	E2\|UBC\|UBC · all ubiquitin genes in this species
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF10408 all species →	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR045132 all species →	Family	Ubiquitin conjugation factor E4	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR019474 all species →	Domain	Ubiquitin conjugation factor E4, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931 all species →	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7337208.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.