Gene detail

Detailed information of KAJ7337236.1 in Desmophyllum pertusum

Genomic Location: MU827781.1:2746758...2782307
NR annotation: KAJ7337236.1, Leucine-rich repeat-containing protein 16A [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7337236.1

ATGGCGGATGATTCCGCGGAGATTGAGCCGGGTCTCCTAGAAAATGTGCAGTTGGCTATCAGAAGGAACATAGAATTGGCCTTTGTCAAGAAAGCGAAAATAGAATTCAAGGGTGACCGTGCCGAGGCTCGAATTTTGGCCCTTTCTGCTCACAGATTCTACGTCCTTACCAGCTCCAAGAATGGCTGCAAGGTGGATTTTAGCATGCATGTTTTGGAAATACAGAAAATCGAGAGTAGTAAACCTCTTTTGTTAACACTTATATGTGGAGACAAATCACATTATTTCCGAGTTCTTCAACCAAAGGACTGTACAGATATTATTGCCCATATCTTGGCGTCTCTTAAATCCAACTTTCCAACTGGCAGCCCAGACCGTCTTCTAAGGGTGGTATACGGGCCGCCAGAAGAAAGCGATGATCGACAAGCACAAGTGACAACACTTGTCAATAACCTACGGAATACAGGAGGAGATGTAGAGATTGGGCCATGTGGTGGATTTTCTAAAGTTTATGTTTCTATGTGTGATTTTTATGGACAGCCACATTGGAAGAAGTTGTTTGGGTATACCAAAAAGGACTTGGTTCCTCTTATTTCAACACTGGAGTACAATGATTGGTTCACTAAAGTGACCTGTGATTCATTTAAACTGGGATCAGAAGTTTGCGATGCAATCATCAAAGTTATCAGAAAGTCCTCTACAATAGAAGAATTAGTCCTTGATAGTGCCAGTTTCGGCAGGGAAAACTGTCAGAAACTTGCATTGGCTCTCACATCAAATCCCAAAACATCTTTGCATAGCTTGAGTTTAAACAGTAACTCCATTGAGGATAGAGGTTTAATGCACATATCTGGTGCCTTCAGTAAGCTTCCCCAAGGTTTGGTGTGTCTTTCTCTTGCTGACAATGGAATCACATCTAAAGGAGCAAGCTCACTGGGTCAGGCATTAAAAACAAATAAGTATAATGAAAGCTCACTGCATAGACTGGATCTTAGCAGAAATCCCTTGAAAGGAGATGGAGTCGCTGGTCTGTGTGATTTCTTGGCCAAGCCAAACATGCTGACTCACCTGGATCTCTCGGCAACAGAATGTCCTCTTGACTTGTTGTTTGGTGCTCTTATTCGAGGCTGTGCTCAACAGTTAGCATCTATCAACCTTGCTGGAAACAGTTTTACCTCAAAGAAAACTAAAGATGCAATTGTTCCGCCATCATTCAAACAGTTTTTTAGCAGTTCCCAAGCTCTTAAATTTTTAGATGTATCAGATTGTAAATTACACGCTGATGCTGTGAGAGCGATCCTCGAAGGATTACGTGAAAACAGTGTACTTTGTGAAGTTGAGCTGAATATCAGCAACAATGAGCTCAGGGGTCCTGGAGCCAAAGCAATTGCTGAAAATATAGCCAACCTGAAATGTGTGAGCAGACTGGATATCAGTGATAACAGTTTTGAAATGGATTTGATCAGGATTCTTGAAAAACTGTATAAAAACAAAACATTGAAATATTTGAACTTGGGACAGAACACGAGACAGCGGAGCTCATCTGCAGTTATGGAAGCATTAGTGCAGCTTATATCCGAGGAAAACTCACACATTGAGTCCATCTCTTTGACTGAGTCCAAACTGAAACATGACATCATTCCACTCCTGGACGCTCTTGGAACAAACGAAACTTTGAAAGAACTTGACATCAGTGGAAATCAAATGGGTGACGAAGGAGCTCGCATTCTGGGCAAGGCCCTCCAAATCAACACCAAACTTAGGACGCTAAACTGGGACAAGAATGGGACGACGTACAGAGGATTTGCTGACATCGCAGCAGCCCTGGAGTGCAACCACACACTACTCTCCATGCCAATGCCGCTACACGATGCTGCCCAGTCACTCAAACCACAGACAGAGCAACACTTAAGAAAGATCGAGAAGTTGTTACTCAGGAACCAGTCGCCTCACAAAGTGGTGACAGAACAGGCGTACAGATTACAGCAGGGTCTCTTACTCACCTCCACACAGCAACAGATGGTGGACCGCCTCGTGGTTCAGTTACAGGACCTCGTGAGTGAGCTCCGACCCTCCAAAGACCCTGACGTGAAGAGCGAGATCAAAACTGCCAAACATTTTGTACAGGATGCAGACAAGCTCAAACAGTTGCTGCTGAAGTTCCATTTGTGTACAAATGACAGTGACATCGAGGCCAGGTTTGCTGAGCTTTCTGGTGACTTTTATAAAGCAGCTGAAGATAAAATGAAGAACAACATGGACAAGATGATCGATTGCGCAAAAGAAGTTTGCCCTTACATTACGTCTTCAGACGATGTGAAGAGCCGTCTACAAGCTGTTGTACAGGGCAAGTCAAGTCTGAGTGAAACGTTTGTGGACGAAGTCATACTCACTCGAGCTGCTGCGGGCATCGCTAATAGGCTAAGTGAAGACAAGCTTACAGTAGCCTCCATCATGGCAGACACGATCATGGAGATGGTAATACATCAACTGGAGAAAAGTGTCAACAAAATGGAGTTGCTTCTGAAGGACCATCGGAACAAAATGGACGACAAGGACGGGGAGACTGAGAAGAGCGCGGAAGAAGACGACGTGGCAGCGGTTGCTCGTCAAGCTCGTAACCGCCTCAGCTCAGCCCAGTTGACGGTGCCCGTGACAGAAGGGATAGAACCTGGTGGAAGGAGCAACAAGAGGAGGCCTACAGTCAACAGACGTCCGTCACCCAGCAGGGTCCCTGAAGAAGACGAAAAAGACAACAAGGAAGAGGTCAAAGTCGCCAAGGAAGAGGTCGTGGAGATGCCTCCACCTCAACTGGTAGTCGCCCCACCTAATGCTGACTTCACAGACATGGAGACAAAGGCCTCGGATCTGAAGCACTTGGTTAAGGATCGGGCTCGGCCCCCTCAGAAAAGGCGCCTACCCACCCGTCCCTCCAACAGACCAGGAGTGGCTAATGGCTCTGCCCAGGACGAGGGCGGCGAAGAGGAAGATATTGAAGTATTTTGGAGCAAGGCAGAGAGCAAGCCGGTGGAAGAGCCAAGTGTGGTAGTGACGCCCGATAAAAGCACAAAGAAGACATCAGTGACTAAATCACCACCCTCGACTGCCACTACATCAAGCAAGACCCCTCCTCCCAGACCTGCACCCAAACCAAAACCTTCACCCAAGGCAAAAGACGGCGAGGAGAATAAAAAATCTGGTTGGATCCCCAAAGGGGGTATCAGTCTTCCTGGATTTTTTAAGAAGAAAGGAAGCAGGGATCGTGCTGCAACGGCGCCTGGTACAACAGACACGGCTTCCACAGCGTGGTATACGAATAACGAAGCTGAAAAGAAGAAAAACGCAGAATCCCGAAATGGGGCTCCTTCAAAGGAAGAGCCTAAGGCTCCTAAAGAGAGGGTCCCCTCTGAGAAGAAACCAGAGGTGTCCAAGGAAAAGGTCCCCTCTGAGAAGAAACCAGAGGTGTCTAAGGAAAGGGTCCCCTCTGAGAAGAAACCGGAGGTGTCTAAGGAAAGAGTACCCTCTGAGAAAAAACCAACAGTGACCATAGAAAAGGCGGCCTCTGGGAAGGAACCGCCCTGTGACAAGAAACAAGAAGTACCCAAACAACGGACACCCTCTGAGAAGACACCTGAAGTGACCATAGAAAGGAGAGAAAGGGCTCCGTCGGGTGGTAAACCGGAAGTCACCAGACCACCCATAATGGGAGTGAAGCCATTTGGTCTTCCACGTGACAGGGTCTCTACAGAGACCGCCTCCCGTGTACCATCTGCCCAACCACGTGATAGGGCGTCCACAGGTGACAAGAGTCTTACAAAGCCCGCCCCTGAGGAGCCTGCCAAACCTCGCGGACCGCCCAAATTTGGAATTGGGATAGGCGGGGCTGCAGGGGGAGGGCTTTTGGCTGAAATGAAATTGAGGCAAGAGAGAGCGGCTAGTTTAGGAAGGAACAAACCCGCTGACAAGCCAGCTGAGAGCAAACCAGCTGCGCCAGGACCGAAGGTGACCATGGGAAGTACAGAGACTGATGCGGAAGTCGCCAAGGAAGGGCTCGTGAAACCGTCGTCATTCAAGAGGCCCAGGCTACCGTCCGGTACTCCGCCAAAACCGGCTCCACGGCCTGGTAAGAAAGACAGCAAGAAAGAGCCACAAGAAGAAAAGAAAGAAGAGAAAAAGGAGGAAAAAGCAGAAGTGAAGAAAGAGGTGAAACCAGAAGAGAAGAAAGAGTTGAAACCGGAAGAGAAGAAACAGGAAAAACCGGAAGTGAAGAAAGAGGTTAAACCGGAAGAGAAGAAAGAGGAAAAACCTGAAGTGAAGAAAGAGGTTAAACCGGAAGAGAAGAAAGAGGATAAACCGGAAGTGAAGTCAGAAGAGAAGAAAGAGGAAACACCGGAAGTGAAGAAAGAGGAAATATCTGAGAAGAAAGGTGAAAAACTGGAAATGAAGAAAGAGGACGAAGCGGACGGGAAAAAAGAAGATCCCGAAGAGGAAAAAGCAAAAAAAGTGGAAGAGAAAGAGAAAACGGTGGAAGATACAGAAAAGGGCACAGAGAATGTTCCAGTTGAAGAAGTAAATAAAAAGGAAGAAGAAAGGAAGGAGGAGGATACGCAAATGAATGTAGGAGTTGATGAGAAAGAAGAAAAGCCAAGTGAAGAAATAGAGGAACCGAAAGAAAAAGCGAAAGAGAAATTAGAAGATGTTATCCCTGACACTGGAGTAAGCAAAGGCGAAGAAACCACAGAGGGAAAAATAGTGTGGATGGAAAGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VZK9	F-actin-uncapping protein LRRC16A OS=Homo sapiens OX=9606 GN=CARMIL1 PE=1 SV=1
Q6EDY6	F-actin-uncapping protein LRRC16A OS=Mus musculus OX=10090 GN=Carmil1 PE=1 SV=2
Q8ND23	Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Homo sapiens OX=9606 GN=CARMIL3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16000 all species →	CARMIL_C	CARMIL C-terminus	Family	Interproscan
PF17888 all species →	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR031943 all species →	Domain	CARMIL, C-terminal domain	Interproscan
IPR041245 all species →	Domain	CARMIL, pleckstrin homology domain	Interproscan
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20493	LRRC16, CARMIL; leucine-rich repeat-containing protein 16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.