Genomic Location: MU827780.1:2776722...2791622
NR annotation: KAJ7337841.1, hypothetical protein OS493_007999 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families
| CDS |
| KAJ7337841.1 |
| Protein |
| KAJ7337841.1 |
| UniProt accession | Description |
|---|---|
| Q9W6K2 | Exonuclease 1 OS=Xenopus laevis OX=8355 GN=exo1 PE=2 SV=1 |
| Q803U7 | Exonuclease 1 OS=Danio rerio OX=7955 GN=exo1 PE=2 SV=1 |
| Q9UQ84 | Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000470 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00867 all species → | XPG_I | XPG I-region | Family | Interproscan |
| PF08797 all species → | HIRAN | HIRAN domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029060 all species → | Homologous_superfamily | PIN-like domain superfamily | Interproscan |
| IPR006086 all species → | Domain | XPG-I domain | Interproscan |
| IPR006084 all species → | Family | XPG/Rad2 endonuclease | Interproscan |
| IPR036279 all species → | Homologous_superfamily | 5'-3' exonuclease, C-terminal domain superfamily | Interproscan |
| IPR014905 all species → | Domain | HIRAN domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11081 all species → | FLAP ENDONUCLEASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004518 all species → | Molecular Function | nuclease activity | Interproscan |
| GO:0017108 all species → | Molecular Function | 5'-flap endonuclease activity | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016818 all species → | Molecular Function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Interproscan |
KAJ7337841.1.Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |