Detailed information of KAJ7339642.1 in Desmophyllum pertusum

Genomic Location: MU827779.1:4062141...4069481
NR annotation: KAJ7339642.1, Protein smg5 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6ZPY2Nonsense-mediated mRNA decay factor SMG5 OS=Mus musculus OX=10090 GN=Smg5 PE=1 SV=2
F1R7R1Nonsense-mediated mRNA decay factor SMG5 OS=Danio rerio OX=7955 GN=smg5 PE=2 SV=1
Q9UPR3Nonsense-mediated mRNA decay factor SMG5 OS=Homo sapiens OX=9606 GN=SMG5 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006483 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10373
all species →		EST1_DNA_bindEst1 DNA/RNA binding domainRepeatInterproscan
PF13638
all species →		PIN_4PIN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018834
all species →		DomainDNA/RNA-binding domain, Est1-typeInterproscan
IPR045153
all species →		FamilyEst1/Ebs1-likeInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR002716
all species →		DomainPIN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15696
all species →		SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005697
all species →		Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0042162
all species →		Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034
all species →		Molecular Functiontelomerase RNA bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for KAJ7339642.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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