Gene detail

Detailed information of KAJ7340402.1 in Desmophyllum pertusum

Genomic Location: MU827778.1:5754818...5785906
NR annotation: KAJ7340402.1, Voltage-dependent T-type calcium channel subunit alpha-1H [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7340402.1

ATGGTGATCAAGATGATAGCAATGGGTATCACTGGAAAGAAGGGCTATTTACAGGACAAGTGGAACAGACTGGACTGCTTTATCGTGATCATTGGCTTGATCGAGAAAGCAGTCAAAAGAGGCAACTATCTTACCATCATACGGGCCTTTAGAGTTCTGAGACCTCTTCGAGCCATCAACAAAGTTCCAAGTATCCGGATCCTGGTCACACTCCTTCTTGACACGCTTCCAATGCTCGGCAATGTTCTTCTTCTGTCATTTTTGATCTTCTTCGTGTTCGGAATCATCGGCGTGCAGCTATGGCAAGGAAAACTGAGAAACCGATGTTTTACCACCTTTACCCAGGACTCAGCCTTCTTTACCAGATATAACCGTTCAACATTTTACCAACCATCCTTCACTAATCCAGATTTCGCCTGCTCTGCACCAGAGGATCTCGGTACCAGCACGTGTTCTGATATCAAACCGTATTACCTGGACGGTAACGAGTGTCATGGCTCCTTTGATAATAACTCTGTTGTGAACAAATCAGTGTGTGTTAACTGGAATCAGTACTATACCGACTGCACACCTAATGGACCAAATCCATTCTTCGATACAACATCGTTTGATAATATCGGTATTGCATGGATTGCCATATTTCAGGTTATTACTCTGGAGGGGTGGTCAGATATCATGTATTTTGTCCAAGATACTCACAACTTTTGGAACTGGATTTACTTTGTCGTACTTATAGTGATGGGTTCATTCTTCCTTGTGAACTTGTGTCTGGTGGTAATCACCATGCAATTCCAGGAAACCAAAGCGCGTGAGATCGAACTGATGGAAAACAGCAAAGACGAATCGCCACTCCACTCATCAAAGCCCCTGAAAACGTTGTTTAGACTTATACATACATTTTGCAACTGCAAGTCTGAAGAAGATCGGGAACACGTCCATCACCATCATCACCACTTTTATCACCATCATCATTTTCATCACCATTTGTACAATTGCTTTGTGCCGTCTTCCCCAGTCGTATTCAACGCTGTGAGTGACCCTAACTTTTTCCCTTCATCAGAAGTGCCAAAAATAAAGGTTGAAAGAGAAGGAGCATTGTCTTCTCCCCCGTGCGTTGACGAACCTGGGGGATTTCAAGATTTCCTTACTCCTCCAGAACAACCCAATTCTAGAAGGAGCTCGAAAACCTCTGTTTGCTCGCATACTCTTTCAATTCATGCCGAAACGTCGTCAGCCGTTTCCATTGACGAAATCGTCGCGCAAACGAAAACAAGCGTAACTTTAAACATTCCGTCACCGACCACTGGTTTCTTTGCTATTTCTTCAAGCAACCGTGCTAGCAGAACAAATTCTAGTTCTGGGAAAACGGAAGTTTCCGCGTCCACAACGGTGTTAGCGGAAATTAATCCACAGCTTTCGCGCGCAAGTACATCACAGGATAAAGACACTGAACTTTCAACAACGGAAAGCAAGGACGAACGGAAGCCATCAGTTCGGCGAAAAGACAAAGAGTTGTTGAAACATCGCCGCTTTAGTCAGCCAGCACACGTCAAGTTAGCCCGCAATCAATCACCTGGTATTTCCTCCTACGATCCATCAGAACTTTTTGTCGAAGAAGATGGAGATTTCAATCAGAAGAAAATAAATCCCGAAATGGTAAACATAGAATGCGACACAGATAAAGACGATGTGGACAGAGAGACGCCATTTGTGAAGGATTTGGCTTTGAAGAGACAGGACGATGAATGCCAACCCGAGGGCTCCTCTAGTGGGGGCCTCAAACGACCTTCTTTAAATCGTCGACATATCTCTTCCCAGAGTGAAGATGATATGTTTGAAAGTCTATTTAACTTGAGGCAAAGTGCAACGTATGACGTCACAACGAATCATGGAGCTTGGCACAGGTTGAGGATTTTTTGTAGGAAGATTACCGAGACTAAACAGTTTACGTTTGTGATCATGAGCGCCATTTTGTTAAACATGATTTGCATGGCGCTTGAACATTACAAACAGCCCGAAAGTTTGACTGTCGCTTTGGAGTCCATAAACATCATCTTTGTGTCCATTTTTGGCATTGAAATGATAATAAAGTTATTGGGGTACGGAGCGACTGCGTATCTAAGCCACGGACAAAATGTATTCGATGGAATCATTGTTATTGTAAGTGTTTGTGAAATACTCCTCTCCAAAGGAAATTCAGCCCTGTCAATATTCCGGAGTATCCGGCTACTCCGTATTTTCAAACTGGTCAGACCAGTTCGATACCAGTTACTAGTGGTCGTGAAAACTATGTCGAGTGTGATGACGTTCTTCGGCCTGTTGTTTCTCTTCATATTTGCGTTTGCAATCCTGGGGATGAATTTGTTTGGTGGAAAGTTTAAATTCGAGAACGCCGAAGGGAAACAAGTGATCTCTCGGAGCAACTTCGATAACTTCCTTTGGGCAATGGTAACAGTGTTTCAGATCCTAACCCAGGAAAACTGGAATCAAGTGATGTACGATGGTATGCGCGCTACAAACAAATGGGCAGCGCTGTATTTTATCGCACTGATGGCTGTTGGGTATTACGTATTGTTTAACCTGTTGGTGGCCATACTTGTAGAAGGATTCACAAATTCTGGGAAACGGAAAGCACGGCCAAAGCTCAGACACGAAACCGTCAAAAACGCACCTAAACCGCCAGTAAGAGAATTTGAAACGCCTCATATCTTGATCTCCAGTAAAGATTCTCAAGAATCGTGTCCAGGAAATTGTTACCCTGAGCCAACCCCAGATTTCTGTGGCCATGGAGTGCGAAACGCCTTAGGAACGACGTTCGAACTGAAGTCGAACTTCACGCCGAGTCTCTCCTTAGCAACAATGGATCCCTTAGAAGGCAAACACCCAGTAGCTGCTGTACAGACGAAAGAAACTAGCTTGACAATGCCACAACTTAAACGCATGCGACAGGCGTCAATGTCGATTATAAGAAGAACAGGACGAGCACCTATAAACATGGATTGCAGTGATGAGGTCGAACCCAACTTCTCCTCGCTTAATTCAGGGTTCCTTGGCGATGATTTAGAAAAAAACGACGGCTGTAATCTTGATACTTCAGAAAGGAATATCGAGATTCCTTGCAAGAGAGCACCTGACATCACGTGGAAAATCGATTCTCCAACAATATCTGACAGGAGATCACGTTCACATTCGAGGCTATCAGAGGCGTCAGTAACAACATATCCGCCGGACTCACCAAGAATGAGTTTCCAGAACAACAGGAGCGACGAAATTTATCAACTGCGAGAATGCCCTGCTCCCGAGGTTCAGGCCAGGAAAAGAACAGTTACGAAGATCACAGAAACACGACCTGATTGGTCCCTGTTTTTGTTCCCTCCCTCAAACAGTTCTGTTTTCATTCTAATAAGCTGCGTGGCCCTGGCACTAGAGGAGCCCAACATAGGCCACCAGAAACGCCAAGTAATCGACATCGCAATGTTTATACTGACCATTATTTTCACCCTAGAAATGATGATGAAGATTGTAGCCCATGGTTTCGTTTTTGGGACTGGGACCTACTTGAAGGACAGCTGGAATGTTCTAGATGGAATCCTTGTGCTCTTTTCATGGATTGACGTGATCATTACGTACAGTCCTGCCACCGCACCAGAAGTACTTGGAGCTCTCAAGGTTTTCAGGGCGCTAAGGACTCTAAGACCACTGAGAATGATCCGGCGTGCTCCGGGATTGAAGTTGGTGGTTCAAACGTTACTTTTCTCATTGAAACCGATTGGAAATACAGTTCTGATCGCCGCCATTTTCTTTGTGATGTTTGGAATACTTGGAGTTCAGATTTTCAAGGGCACCTTTTATTACTGCGAAGGAAACAGTCACGTGACAAACAGGGCCGAGTGTGAGAATAGCACTCAGGGTAAATGGGAAAATCACATGTACAATTTTGACAACTTACCCAAGGCATTAATATCCCTGTTTGTGTTTTCCACGCGAGATGGATGGGTAAAAATAATGCACAATGGTATTGATGCAGTCGGAGTCGACAAACAGCCCATCATGAACTACCGCGAATGGCGACTGGCGTACTTCATTCCTTTCCTAATGTTAGGAGGTTTCCTTGTGCTAAACATGATTGTGGGCGTGGTCGTAGAGAACTTTCAGCGCTGTCGTGAAAGACTAGAGGACGAGGAAACGCAGAGAAGACGAAAGAAATTGCTGGAAAAGGCAAAAACTAAGAATCAAGAAGAAGTGGAACGTACATATTACGAAAGTTACAGCGCATGGCGCAGGCACATTCATGACATGTGTCTTCATCTGTACTGGGACGTGACTATTGCCATGGTGATCTGTCTCAATGTACTTTGCATGTCACTAGAACACTACCAGATGTCCCAGACATTTGAGATATTTGTGGAGACTGCGAATTATTTTTTCACTGCTGTCTTTGTGTTGGAGGTGATATTCAAATTTATCGCCTTTGGATTCTTGCGATATTTTAAAGATAGGTGGAATATTGTTGATCTGGTGATTGTAATTCTATCCCTGGCGGGGATACTCATCCAGTCTCTAAGCTCTACAAGAAAACTGCTGATCAATCCTACAGTTGTACGGTCATTGAGAGTGCTACGGATCATTCGAGTGTTGAAGCTCGTGAAACTAGCAAAGGGAGTCCGCTCGTTACTGGACACTCTGTTCGAAGCTCTTCCTCAGGTTGCGAACCTTGGATTTTTGTTCCTGCTTTTGTTTTTTATTTATTCCTGTTTGGGTATCCAGTTATTTGGAACACTTGAGTGTTCTCCGTCTCAACCCTGCCAGGGACTGGGTCCGCATGCGCACTTCAGGGACTTTGGTACTGCCATGTTGACCTTGTTTAGGATAGCAACGGGAGATAACTGGAATGGAATATTAGAGGACACTCTGCGTTCCCAATGCTCCGAAGCTGCTGAGTGCGAAAAATACTGCTGCGTCAGCAAATACACAGCACCGCTGTTCTTCGTAACGTTTGTACTGGCGGCGCAGTTTGTGCTAGTCAATGTGGTTATTGCTGTTCTCATGAAGCACTTGAAAGAATCGAAAGAAAAGATCGCAGCAAATATGGCCGCCAAAGACTTAGAGAAGAAACTAAAACTACTGACCATATCGGCGAAGAACTTTATTCGAGGAAAAGCCAAGAAAAGCGAGACTTCAATCGCAAGACGACGATCTGTTATACAACTCGGCTTGGGAGGAATAGAACTTGCTCAATTAAAAAATTGCGCTCCGGAACAAACAGTGCGGGGCGAATCTTTTTGCGATGAGTTCGCCAGAGCTGACGCGATTTTTCAAGAATTTTTGCGTTTAAATGCAAACCTGCAAAAAGTGAAAATGACAATCGTTCGTACTGCGTCACACAACTCTCAGGTCACGCCGCCTGTTGTCACGCCTTCTGGACGTCAAAGACGCAACACTGTTTGCGGAATAAGGGAACTTGAGTTCCAGAATACCACATCTAACCTGAGTAAATTCACTGTATATAAATCAGGAGCTAAGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88427	Voltage-dependent T-type calcium channel subunit alpha-1H OS=Mus musculus OX=10090 GN=Cacna1h PE=1 SV=3
O54898	Voltage-dependent T-type calcium channel subunit alpha-1G OS=Rattus norvegicus OX=10116 GN=Cacna1g PE=1 SV=2
Q9EQ60	Voltage-dependent T-type calcium channel subunit alpha-1H OS=Rattus norvegicus OX=10116 GN=Cacna1h PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001282 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR043203 all species →	Family	Voltage-gated cation channel calcium and sodium	Interproscan
IPR002077 all species →	Family	Voltage-dependent calcium channel, alpha-1 subunit	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10037 all species →	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001518 all species →	Cellular Component	voltage-gated sodium channel complex	Interproscan
GO:0005248 all species →	Molecular Function	voltage-gated sodium channel activity	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008332 all species →	Molecular Function	low voltage-gated calcium channel activity	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0070509 all species →	Biological Process	calcium ion import	Interproscan
GO:0086010 all species →	Biological Process	membrane depolarization during action potential	Interproscan
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04854	CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.