Gene detail

Detailed information of KAJ7351029.1 in Desmophyllum pertusum

Genomic Location: MU827369.1:172744...181670
NR annotation: KAJ7351029.1, DNA-directed RNA polymerase II subunit RPB1 [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7351029.1

ATGGCAATCTTCGCAGAAATGAACTCAATGGGGCTGCCAGCTCATATCATTGCTGAAGATACAAAAATGCTCCAGTATCATGTCGCAACATTGATAGACAATGAAATCCCTGGTTTGCCAAGGGCCATGCAAAAGTCTGGCCGTCCACTGAAATCAGTGAAACAGAGACTGAAGAGCAAAGAAGGACGTATCAGAGGAAATTTGATGGGAAAGCGTGTTGACTTTTCAGCTCGAGCTGTTATTACGCCAGATCCTAACTTGTCTATCGACCAAGTTGGAGTTCCGCGTACCATCGCTCAGAATCTTACTTTCCCTGAAATTGTCACACCATTCAACATTGACAGCATGCAAGAGCTTGTGCGTCGTGGCAACAACCAATATCCAGGTGCTAAATACATTATCAGGGACAATGGAGATAGGATTGATCTGAGGTTTCACCCCAAACCTAGCGACCTTCATCTTCAGTTTGGATACAAGGTGGAACGACACATCAGAGATGATGATGTGATTATCTCAACCGTCAACCTACCCTTCACAAATGTCCATGATGGGACACAGATCTCACCCTGTGTACATCTGTCTTTCAATTTTAGTGTCACCACGCCATACAATGCCGACTTTGATGGTGACGAGATGAACTTGCATGTCCCCCAGTCCCTAGAGGCACGTGCAGAAATCACAGAGATCATGATGGTGCCGAGAAACATTATCTCATCGCAGTCAAACAAACCTGTCATGGGAATTGTGCAGGACTCTTTGATGGCTGTCAGGAGATTCACTAAAAGAGATGTTTTTCTTGAAAAGGATACTATGATGAACCTGATGATGTGGATTCCTGACTGGGACGGTAAGATTATACAGCCGGCCATTCTCAAGCCCAAGCCATTGTGGACAGGAAAACAGATCTTCAGTATGATCATCCCAGGAAATGTGAACATGATCCGTACACACAGTACCCATCCAGATGACGAAGATAGCGGCCCGTACAGGCACATATCACCTGGAGATACAAAGGTTCTGATCGAGCATGGTGAACTTATCTCTGGCATTTTGTGTAAGAAGACCCTGGGTACCTCATCAGGGAGTTTAGTCCACATTGTTGTTGTTGAACTGGGTCATGAGATTGCCCGTATGTTTTATGGCAATATCCAGACTGTTATCAACAACTGGCTTCTCATTGAAGGCCACAGTATTGGCATTGGTGACTGTATTGCCGACAATGAAACTTACGAAGAAATCCAGAGAGTGACAAAGAAAGCCAAGCAAGATGTGATAGAGGTTATCGAGAAAGCTCACAACGATGATCTTGAACCAACACCTGGTAACACTTTGCGGCAGACTTTTGAGAATCAAGTGAATCGTATCCTAAACGACTGTCGTGACAAAACAGGATCAAGTGCTCAGAAAAGCTTGTCAGAATTTAATAACTTCAAAGCTATGGTGGTTTCAGGCTCTAAAGGCTCTAAGATCAACATTTCACAGGTTATCGCTGTGGTGGGTCAGCAGAACGTTGAAGGTAAACGGATTCCATTTGGTTTCCGTCACCGCACACTTCCACACTTCATTAAAGATGATTATGGTCCTGAGAGTCGAGGGTTTGTGGAGAACTCATACCTGGCAGGACTTACACCAACAGAGTTCTATTTCCATGCGATGGGAGGTCGTGAGGGATTGATTGACACTGCTGTGAAAACCAGTGAAACTGGTTACATCCAAAGACGTTTGATCAAGGCCATGGAAGGTTTAATGGTGGCTTATGACGGTACGATCAGAAACTCTAACAATCAGATGATCCAGTTGAGATATGGAGAGGATGGAATGGATGGAGCTGCTGTTGAATTCCAGAACATGCCGACAATCAAACCAACCAATGTTGCTTTTGAAAAAAAGTTTCACTTTGACTGCGCCAGTGAGAGGCGTCTCCGTCGTCATCTGCAGGAAGATGTCGTACGGGACCTGTGTAGTAGTGCCTCTGCCCTCCAGGATCTTGAAACAGAGTATAGTCAACTGCAAGAAGACAGAGAGATTCTTCGTAGGATTATTCCTTCTGGGAACTCAAAGGTGGCTTTACCAGTGAATCTTGGTCGTTTGATCTGGAATGCACAAAAGACATTCCATCTTACCAACAGAACACCAAGTGACCTACACCCTCTCAGAGTCACCGAAGGTGTGCGCGAGTTGTCCAAGAAGCTGATAATTGTCCATGGTGAGGATCACATCAGTAAACAAGCTCAGTTTAATGCCACACTGTTATTCAACATCCTCCTCCGTTCCACGCTGTGCACCAAGCGAGTTGCTGAGGAGTTTTCACTTGTCATCGGAGGCTTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3MZY8	DNA-directed RNA polymerase II subunit RPB1 OS=Bos taurus OX=9913 GN=POLR2A PE=1 SV=2
P11414	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2
P24928	DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF04992 all species →	RNA_pol_Rpb1_6	RNA polymerase Rpb1, domain 6	Domain	Interproscan
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR007075 all species →	Domain	RNA polymerase Rpb1, domain 6	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7351029.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.