Gene detail

Detailed information of KAJ7351811.1 in Desmophyllum pertusum

Genomic Location: MU827355.1:341076...354523
NR annotation: KAJ7351811.1, Poly (ADP-ribose) polymerase [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAJ7351811.1

ATGTTGGACGAAGCAGTCATATTTTGCCAGAACAATCCACAGTCTTTGGTGAAGGACATTCGTTTTATTCTGTTTCACGGAAATCAAGGAATCATTGATGCTTTTAAGCAGGAAAGCAACGCTTTGCGAGATAAGCATCGTAAAACTGTGGAGGTCATCCAAGGTGACTTGACCCAAGAGACAACAGACGCCATCGCAAACATCATTGGTACAGACATGAACATATATGGAGCGGGGCAGTTAGGCAAAGCAGTAGCTATGGCCAGCGGTATGCAAGTAGAGGACGAGTGTCAAAAACTTGGCCAGCAACCCGCGGCATCCGCTGTCATGACAACTGGCGGGAGTCTAACAGCACCAAATATCATTCACATGGTTGTAGGATCCACGAGTAAACAGCACCTCCAGTTGTGCGTCGAAAAATGTCTTCAACTGGCAGACGCGAACGGTCTGAAGACAATCTCACTACCAGCGGTTGGGACTGGGGATGGTGGACTATCGGAGGTGGACTCGGCCCAAGTGACGTTCCAAGCCTTGAGGAAGATTTTAGAAAACTGTGTAAACTTGCGTCAAGTTAGAATCGTCCTGTACCAAACTAAGATGATGGGTGCCTTCCAGAACGAACACAAGCTTATGCAACAACAGCAAAAGAATAAACAGCCCCCAGTTTCCAATTCTCCTCCAGTGAAAACTGAGGAACCGCCCAGGAAGAAGCCACGGATGACGTCACAAGATGGCGCGACAGATCCGAACAACAAAAACAAAATAAAAATCTACGTCAGCGGGGCCAGCAAGGCCGCTGTTAACAGGGCTATTAACACACTGAAGCGCGGGCTCACCGAGGGATTCACAACTCAAAAGGTTCAACACGTAGCTGTCGGTCAACTTTCTAAGAAACAGATCCGTGATCGGCTTCAGAAACCGGCCCAGAAGCATGACGTAGAAGTGGAAATTGACCAATCCAAGAATCGTATTCTAGTCCGTGGTGAACACAGCGGTGTGGCAGAAATGGTCGGGAAGATCTGGTGCCTACTTAACGAAACAACAGAAATTGAGCGCGCCAAACTTACAAAGACGTCACTTCCGGCAAACTGGGACCCAATGCCTCTCAATCAACTCGGACATGACGTCACTGTACACTCGGTTGAATTATCCCCAGCGTCTACTGAGTACAAGTATGTAGCAGGTAGATTCCACCAGACTCTGAGTCAAGTGGCCATAGTGAGTATAGAGCGCATACAGAATCCTCATCTTTACCAGACTTACCAACTTAGGAAAGAGAAAATGGATAAAGACAACGGAGGAAACAACGAGAGGCAGCTGTTCCATGGAACGAACCCTGACAGCGTGACAAAGATCAACACACAGGGATACAACAGAAGCTTCTCAGGACTGAATGAAAACAAGATCCCCGCGAGTTCTGCTGAAAAGGATCAAGAAAATAACGAAGAAAGTACCGCTACCTCTGATGAAACTCATCACCATAGCAACCCATTGTTTATATCTGAACGAGCCACCTGGAATATAGTGCCACCGCGCAATCAGCATTCGAGACCACAAGGAGAAGGGCACGGAGGTGGAGCTCGAAGCAATGCGACCACAGCCGGAACTCCTCGTGGAGGAACCCGCAGTAAAGCTGGGAATAGAGGGACATCAAAGCAATCAGTTCCCCGCCAAAGGGAATTTAGTGAAGGGGCTGATAGAGCACGTTGTGATGATGGTCGTGGACGAAGGGGATCACGTGGACGTGGCTTTGACGGTCCACCAGGAAAGTCACAAGGAAGAGGAGGACCTCATCACCAATCTGGACCAGTGCCACGTCAACGCTTCGACCCAGTCTCCTTAGGATTTACACAACCTGACATCAGGTATGAGTGGAACAAGCTGTATGTTTTGGGCTTAAACTTCAGAACAACACCAGACGGTGTAAAGAATTACATCGAGAGAATCAGTGGTGGTAAGTATGATGTCAAATATGTGGAGTGGTTCAAGCCAAATGGAAAAGCCATCGTGACGCTAAAAAATGAAAAAATTTCAGATTTTGCGAAGATTCTCAGAGAATCGAAGAAAAGGACACTCGACCGTGAGAACGTGTTGATTGAAAGAGCCCCTGTATGCAAGAGCATCTATGTCAGCGGATTTTCTGAAAATATATCGAAGGAGGCAGTGGAATCGCACTTTGATGAAATTGGTGCGTTAGAGGACGTTGTCTTTAGTCCATCCTGGGACGATGAAGAAAAGCCCATCAAGAGAGCTATTGTGTACTTCAAAGACAAGAAAAGTGTAAAGAAGTCTACCAAGAATGACCAATTTATTGATGGTAAAGCTTTACATGTAGAGGCCTTCTATCCTTTTATGGGAACACTTGTGCCAGTTGACCAACTGACAAGACAACGGCGGCCTACATCAGCTGAAGTCGAAGGAGCCGGACAACCCCAGTTTTACAAATCAGTTGACAAGGACATCATAAATTTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
B5F961	O-acetyl-ADP-ribose deacetylase OS=Salmonella agona (strain SL483) OX=454166 GN=ymdB PE=3 SV=1
B5RBF3	O-acetyl-ADP-ribose deacetylase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=ymdB PE=3 SV=1
P67342	O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi OX=90370 GN=ymdB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00644	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF01661	Macro	Macro domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR012317	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR002589	Domain	Macro domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan