Gene detail

Detailed information of KAJ7353985.1 in Desmophyllum pertusum

Genomic Location: MU827335.1:439145...450246
NR annotation: KAJ7353985.1, hypothetical protein OS493_030834 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAJ7353985.1

ATGAAACTCCCAGAGGAATTGTCTTTGTTAGCATGCGTAAGACAGCCTTCAAAGTATGCGAGCAAATTAAAAACTATCCCTGAAGTGGCAGAAAAGCTAAATCCTCAGCCTTTTGTCGGCCATGGACGGGGAAGTTATGAAGGAATGGCGTGGAAAGATGAACAAGAGGTTTTATTGAAAATGTTTAGATCAGGAGTGACGAAGCTTCTCATTTGCACCAGTGTTCTAGAGGAAGGGCTGGATGTTCCCGAATGTAACCTGGTCGTCCGTTTTGAAGGCACGGCAACCCTGCGGGTTCTTGTACAGTCCCGCGGGCGGGCGTCCCGCCGACCCGACAGCAAGTTTGTGGTGATCTGCAATGAAAAGGAAGAAAACGATTCAAAAGATGTGCTTCTCAAGGAGCAGAACATGGAAGAGGCAATTAGACGACTGATGCAAATCCTTGGCACTTTCGTTCATCGATGCCATTTTCGATTTGAATGGCCTTTGGAGCCCATCCTAGAGAGTGTTAAGATTGACTTTGACCACAGCCTCAAGATCTTGACGGTTTATTGGTCCACGCAAGGAAATTTGTACAAGTTTGAACTTCGGTACGATGAGCTTGAAGATTTCATACTCGTGGACAGCGATGTGGATGCTGAACTGAACAAAGTGTTTATCTCGACAAGACACCCTCCTCGATTGTATCAATGTGTCGACAACGATTTTCTACAAGATGTCCAAGATGTGAACGATGGTATTCAAGAAGAACAAGATGTTCAAGATGTCAACGAAGAGCAAGATCTTAACGAAGAGCAAGATGTCAACGAAGACCAAAATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAAGAGCAAGATGTCCAAGATGTCAACGAACAGCAAGATGAAGACGATGGTTTGAGCGACTCGTTGGACGATAGGAGTGACTCGGAAAGCGACGACAGCTTCTCGACTGACGAAGAATACCCGGTTGTGGTAAGGAATTTTCGCGATCGTTCTTCTCCAGGTTACATCATCAACATGCAGAGGAAGATCTGGGAAAGAGTGTCAGATATCCAAAACAGTGAGAACGCTTGGAGTCAATGCTTCACCTACTGTTTCGCGATACCATCAAGGGAATCTCTCAATCTGATGCGCTTGTTAACCACAATCGAGAGAAGATTCGACAAAAAAGCATTTTATTGTCGCGTGAAGGAGAGCTATGGTAGATTTCCAAACGTGGACATTCCCACCGATTTGCCTTTTGACGTCAAGTACGCTGCACAGAGTGTCATCGGTTTTCATCCCGTTATTCGCGGAGGAGTAGAGCCTGGATCGTTCGGAAACCTTTTTCAAAGCAAACCTTCAAATGTGGTCACCACAGCTTTGGAGAAGTTAAAGAAAACGTTGGAACAAGACAAGTTCTGTGATCCCAGCAAGACTCTGCAAGCGCTGCTCAACCAAAACCGTCCATCGACTTCCGGGATTCATAATAGACTCGTGCCAAGCCACTGTGCTCTGATAAAGCGCGCGGTCATCACCCCAACGAGGCTACTGCTGTACCCACCGGAAGTCATGGTCAAAAATCGTGTGCTCAGGCACTATGAAACAGACGACTTCCTTTGCGTTAGTATTCGTGACGAGGATCTCTCTAAACTCTCCGCCGCAGGAGGAAGCATCGACTTAATTCTGGATGACGTGAAGCGTGCATTGGATGAAGGACTGGGGATAGCTGGCCAGCGGTTTCCCTTTCTGGGCTCCTCGAACAGTCAGCTTCGTAACCATAGTTGCTGGTTTGTCGGGCCCAGTTCTCAACCGGTGAAACACATACGTCGCTGGATGGGAGACTTCAGGACAATTAAGTGTGTCGCCTCCTATATGGCTCGCATGGGTCAATGTTTTTCTACCTCGATGGACACTGTAGGCATTGCGATCAGTGAAGGGATTTTTTGTAACGAGGTAAAAGACGTTAAGACAGCTGACCACAAATACTGCTTCTCGGATGGAATAGGCAAAATATCAGAAGAACTGGCCAAAGAGGTTGTCAAGAAAATCGCTAAACCATTCAAGCCATCAGCATTTCAAATCAGATTCGCTGGCTACAAAGGAGTCCTCGCGTTAGATCCCAGTCTTCCAGGAAAACGGGCTTCTTTCCGTCCAAGCATGCGCAAATTTGAGAGCTTTCACCGTAGGCTCGAAGTGATCATGTTGCTCTCTAACCTGGGAGTCCCGGATGAAGTTTTTATCACACTGCAAAGTGACATGTTGGAGAGGCTGGCAGGGATGCTGGTAAATGAGCCTGACGCTGTCGACTTGCTGGGAAATGGAGCCAAAATGGGCTTGTCCTACCACCGTTTATCGGGCGCAGGGGTACCGCTGACAACCGAGCCGTTCTTTAAATCCCTACTGGTCGCCATGTATAGAAATAGTATACATGAACTTCTCTCCCGAGCCCGCATTCGTCTGCCACCAGCGGAAGCACGTTTGATGATGGGTGTCATGGACGAGTTAGGTGTATTGAAACCCGGCCAGGTTTTCGTGCAGTATTCGGCGGTATCAACGCTTGCGGACCAAGAGGACGAATTCAACAGAAACATCAAACTTGTACTTAGGGGACCGGTGGTAGTGACTAGGAATCCATGTTTACATCCGGGAGATGTTCGGCAGCTCGAGGCTGTAGACGTACCAGGGCTCCATCATCTTGTGGATTGCATTGTTTTCCCGCGTCAAGGCTCGCGGCCCCATCCCAGCGAGATGGCAGGCGGTGATTTGGATGGCGATCTGTACTTCGTCTGTTGGAACGAAAGCCTATTACCAAGGAAACCTAATTTCCCGCCAATGGACTACCAGGCACATACAAAAAAGGAACAGGATGAACCAATCACAGCTAAAGACATGACCACGTTTGTGGTTGATTACATCCGGTGCGACCAGTTAGGAGTGATTGACAATGCGCACAAGGCCCTCGCAGACCTGGAAAAAGGCGGAGTTAAATCCCAGATCTGTCTTCACTTAGCAGAGCTTCACTCCCTGGCGGTTGACGCGCCCAAGACGGGATTGTGGCCCAAGATGCCGGAAATGCCACCGATAAAGAAGTATCCTGATTTCATGATGAAGTCTGATAAAGCCAGCTATCCGTCTGAAAAGCTGCTAGGAAAGCTTTATCGTCGCTGCCGAAAGTTTAAAGACGCGGCATCGGAGAGGTACAGCCAAAAAATGCGAGTCGACAAGTCATTTATGTTGCCTGGTCACGACAGGTACGTTAAAAAAGCACAAGAAGTCTATGAGCAGTACCGTGACAAGATGGAAGCACTGATGCGCTTGTACGGTATAGACACTGAGGCTGAAGTCTTCACCGGCTGCTTCTTGAAGCTTCGCAATCGATTGCGCAAAGAGAAAACCGAGATCGCAGAAATCGTTGGCGAACTTCTGTTCGCGTTACGATCCGACTTCCGACGTGATTTCTTTCGTGAGTTCGGCAAGGATGGGCAATGCTTGGTGGACAATGCGCTGATCTCGAACGAGATGCATCTAAAAGCGTCGGCCTGGTACACAGTAGCTTACACGCATGCGCATGATCATGCAGACGACCCGGACCCAGTCCCCGAGAAGAGATTGCTTGGCTTCCCCTGGTTTATCAATGACGTCATGCTCGCCATCAAAGAACGCAAAAAAACACTCGGTTTAGGCCAGGGTCTGGATGTTAAAGCAAGGGTGGGTGAGAGCCTTGCCAGACTGTTTAATGAAGAGAAGACGTGGTTACTTGAAGAATTCAAAACACGAGTAAGAATGAAGAACTCGATTTCTAGCCATCTCAAGTCCTTTCAACCCAACTGCTCGATTACTATGATAGGTTCTTCCGCGACACTTCTGCTTCACAAGAAGTCAGACTTGGATCTGTGTGTTTTACCACAGTCGATCCACAGCAGCAACTTGAGTGGGCTTCCTGTGGTGCCACCGGAAGAGGACGACATTTCAATTGAAGATCAAGCAAAGGCTCTTCAGCAGCTGAGTTTTCATCTGAAGGATAAAGAACTCTTTCGCAAAGTTCGTCTGGTCAACAAAAAGCATTTCCCGGTCCTTGTTTGTAAGCGGCCAACAGACGAGCTAACAGCTGGTGGCAGTTGCTCTTCAACCCTTTCTTGTGATTTGAGTTCTTCCCCAAACAGTTTGCCAGTGGCCATCTTGTTATCCAGCTACATGAAGTCCTATCCGCATCTGTTGTTGGTGCTTCGCGCCGTTCACCGATGGTGTTGCGTGACAGGATTGTCACGAAACGCGGCTGGTGCTGGAAACTCTTCTAACTTGCTGGCCAGCCTGCTTCTTGCTCAGTGCATGCGCAAGGGTCGCATTCAAAAGTGTACCGAAGAATTCGTCACAACCAAGAAGCTACAGCTACTACAAGGTGACGTCAAAGATGGCACCCAGTACATGGACTGGGAAAATACCATTCTCTTTCTTGACGAAGCTAGCAGTGATAACCCAAATGACCCACACCTCCCCCAAGCGGAGCTAGACACCACCCAGCTTGGTGAAATCCTCATGACGTTCTTTCAGACGCACGACTCGTCTTTTGAAAGAGAGCTCCCAGAATCCCTGGCGCGTGTCTTGCGCTTGCGTAAACTTTCAGAGCTGCTGGACAAAGAGCATTTACTCCTGGTGAAAGAACACATGCAACGCGGCTATCAGCTGTTAGCGTTGTATGGAGATGTACAGATCATGCTGGCCATAAGCGGCTCTGAAGATTACAACGTTATCTTCCTTTCTCCTCTTCTTTCATCCTTCATGGCAGGTATCGAGAAAAGCAAGGGTCTAGAAATTGCGAGGAAGACTGGAGCGACGAGCATAGTCATTCGCCCCAGTTTCTCCCGATCTCGAATTTCAACCATTCTCGAGGTGAAAGGAAGTGAGCCCGCCATTCGTGCGGTGGAGAGAGAGCTGGAGAGAATGACCACACAGGCGTCACGTGACAGGGTGTCACTCATGAGTGGCTGTTTCGTGGAAGATGCCAGTCTGCTGTTGTTTGAAGGCAGTCGGAATCAAAACGATCACGTGACGCTGATGCCATATGACGGGCCTTGTCATCAGACACACGATAACCTCGCACGCCATGTCGCTTTGTTAAACGAAGCCGTCTGCAACGAGTACGCGTTTCGCCGCTTCACAGATAAGTTTTTTCAACAGCTGCGGGTACTAGAGAGGGATTTCGATTCTCAGCTGCATGGCTGTCGTGAATTCGCCGTACCCTTTGGACGAATCTACATGTTTTGTGTGCCACAATCTTTGCTGGAAGACATCGACTCCATCACCTTTGCAAAACTGAGAGCAAATAAGCGGAGACCGAGAGTCCCGCAAAGCAGCTGCGAAGCCCCTTTTACGGTCACATACGTCGACCAGGAGGAAGAACGCGCCAGACGAAGGAGACGGCGACCAAAACGCGCTGTTAACACCGACGAAAACAGAAAGAAGCGGAAACGAGAAAATCCTTCAAGAAGCTCGTTTTACACAGTCGTACATTCGCCGGACAGAGTGAAGACATTTCTCGACAGATGCGGATTCCAGCCTGACACAAATCCTACGAGACAATACTCAATAGACATCTGTGACGAGGGTGTGGAATTTTACGTACGATTCGACAGCAACTTCAATTTCATCGAGGTCAAGTTTCCAAATCTGCGTTGGTGCATGGTAGATGTCAAGAGACCCTGGCAACAGCGCCCAAGTCATGACGTCAGACAAGATGGCGGCCAGGCAGATGATGACGTCATATTAGACGGTTGGGAGACGGATATACGCTTCCTTTTACAGTCCCGCTGTGTTTTGGGTCCGAGCGACCTCCGGGGTACAAAATACGCCAGGTACCAGCACATACTGGAACCCGGTAATCACGGGCAGCCTTTTACAGTCCAGGAAGACTTATGGAAAGATGTGAAGCTGGTCCGTTTGAGCAAGGTTACGAAGTTCACACGCCAGTTACCGCCACGTGGTTACTTGTGTGGCTTAGCAGTGCACCTTGGCGAGGTGACAGAGTACTCCAGACCACTACAGGGCGTGGCTGAATTCGGGAGAAAAGTCACTCGATGGGAGGCGTCGATGGAGGCCACGCTCCCAACAGATTTAACAGTGAAGGAGACCATGAAGAAGTTTCTACATGAAGTCTGGGAATTCGCTTTCTCTATGTCCTCGTTCGTGTCGCTGGTCCCAACACAAGATTAA

Transcript

Protein

KAJ7353985.1

MKLPEELSLLACVRQPSKYASKLKTIPEVAEKLNPQPFVGHGRGSYEGMAWKDEQEVLLKMFRSGVTKLLICTSVLEEGLDVPECNLVVRFEGTATLRVLVQSRGRASRRPDSKFVVICNEKEENDSKDVLLKEQNMEEAIRRLMQILGTFVHRCHFRFEWPLEPILESVKIDFDHSLKILTVYWSTQGNLYKFELRYDELEDFILVDSDVDAELNKVFISTRHPPRLYQCVDNDFLQDVQDVNDGIQEEQDVQDVNEEQDLNEEQDVNEDQNVQDVNEEQDVQDVNEEQDVQDVNEEQDVQDVNEQQDEDDGLSDSLDDRSDSESDDSFSTDEEYPVVVRNFRDRSSPGYIINMQRKIWERVSDIQNSENAWSQCFTYCFAIPSRESLNLMRLLTTIERRFDKKAFYCRVKESYGRFPNVDIPTDLPFDVKYAAQSVIGFHPVIRGGVEPGSFGNLFQSKPSNVVTTALEKLKKTLEQDKFCDPSKTLQALLNQNRPSTSGIHNRLVPSHCALIKRAVITPTRLLLYPPEVMVKNRVLRHYETDDFLCVSIRDEDLSKLSAAGGSIDLILDDVKRALDEGLGIAGQRFPFLGSSNSQLRNHSCWFVGPSSQPVKHIRRWMGDFRTIKCVASYMARMGQCFSTSMDTVGIAISEGIFCNEVKDVKTADHKYCFSDGIGKISEELAKEVVKKIAKPFKPSAFQIRFAGYKGVLALDPSLPGKRASFRPSMRKFESFHRRLEVIMLLSNLGVPDEVFITLQSDMLERLAGMLVNEPDAVDLLGNGAKMGLSYHRLSGAGVPLTTEPFFKSLLVAMYRNSIHELLSRARIRLPPAEARLMMGVMDELGVLKPGQVFVQYSAVSTLADQEDEFNRNIKLVLRGPVVVTRNPCLHPGDVRQLEAVDVPGLHHLVDCIVFPRQGSRPHPSEMAGGDLDGDLYFVCWNESLLPRKPNFPPMDYQAHTKKEQDEPITAKDMTTFVVDYIRCDQLGVIDNAHKALADLEKGGVKSQICLHLAELHSLAVDAPKTGLWPKMPEMPPIKKYPDFMMKSDKASYPSEKLLGKLYRRCRKFKDAASERYSQKMRVDKSFMLPGHDRYVKKAQEVYEQYRDKMEALMRLYGIDTEAEVFTGCFLKLRNRLRKEKTEIAEIVGELLFALRSDFRRDFFREFGKDGQCLVDNALISNEMHLKASAWYTVAYTHAHDHADDPDPVPEKRLLGFPWFINDVMLAIKERKKTLGLGQGLDVKARVGESLARLFNEEKTWLLEEFKTRVRMKNSISSHLKSFQPNCSITMIGSSATLLLHKKSDLDLCVLPQSIHSSNLSGLPVVPPEEDDISIEDQAKALQQLSFHLKDKELFRKVRLVNKKHFPVLVCKRPTDELTAGGSCSSTLSCDLSSSPNSLPVAILLSSYMKSYPHLLLVLRAVHRWCCVTGLSRNAAGAGNSSNLLASLLLAQCMRKGRIQKCTEEFVTTKKLQLLQGDVKDGTQYMDWENTILFLDEASSDNPNDPHLPQAELDTTQLGEILMTFFQTHDSSFERELPESLARVLRLRKLSELLDKEHLLLVKEHMQRGYQLLALYGDVQIMLAISGSEDYNVIFLSPLLSSFMAGIEKSKGLEIARKTGATSIVIRPSFSRSRISTILEVKGSEPAIRAVERELERMTTQASRDRVSLMSGCFVEDASLLLFEGSRNQNDHVTLMPYDGPCHQTHDNLARHVALLNEAVCNEYAFRRFTDKFFQQLRVLERDFDSQLHGCREFAVPFGRIYMFCVPQSLLEDIDSITFAKLRANKRRPRVPQSSCEAPFTVTYVDQEEERARRRRRRPKRAVNTDENRKKRKRENPSRSSFYTVVHSPDRVKTFLDRCGFQPDTNPTRQYSIDICDEGVEFYVRFDSNFNFIEVKFPNLRWCMVDVKRPWQQRPSHDVRQDGGQADDDVILDGWETDIRFLLQSRCVLGPSDLRGTKYARYQHILEPGNHGQPFTVQEDLWKDVKLVRLSKVTKFTRQLPPRGYLCGLAVHLGEVTEYSRPLQGVAEFGRKVTRWEASMEATLPTDLTVKETMKKFLHEVWEFAFSMSSFVSLVPTQD

Uniprot

Uniprot term	Description
Q0DXS3	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q8LHH9	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11699	RDR, RDRP; RNA-dependent RNA polymerase	EC:2.7.7.48	Chromosome and associated proteins	ko03036	deepkoala