Gene detail

Detailed information of KAJ7355995.1 in Desmophyllum pertusum

Genomic Location: MU827326.1:209619...267069
NR annotation: KAJ7355995.1, TNF receptor-associated factor 4 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7355995.1

ATGGCGGAGGGCGGATTTCTCGGATACCTTGACCCATATGAAGAACTTGAAGATTTGGAAATACGTGCATTCCACCGACTAGAACTCGAAGATAAACCCATACAGTTTGGTGGGCATGATTTTGTGTTTGTAGATGGGTTGTCTGCAGGTCAAACGTGCTCCATTTGCCTTCTTGCCATGCGGAACCCCGTGCAGACTATATGTGGCCATCGCTTCTGCGAAAGCTGCTTGAAAGGGACATTCACGAGCCGTATATCAGAGCCCTTGACGGACCGCTATAATCTCTTCAGACCCAACAGGCGAGGCCGTGATCAAGTTTGTCCGCATGATAGGAATCCTATTCCTGAATATGGAGGGTTCTTTCGTGATGTAGCCTGGGAGAGGGATATACTTTCTCTACGCGTCAAATGTAAGAAGACTGAAAGAGGGTGTGACTGGACTGGGCAACTACGTCACTACGAGGAACACTTTACCTTATGCGAATATGAAGACGTGACTTGTGCTGCCTGTGAAGAAGTGTTGCAGAGACGGTTCCTGCAAACACACACAACTTCAGAATGTGACAAAAGGATCGTGCAATGTGAATACTGTGACAAGGAGTTCGAGTTCTGGTGCACAGAGATTCATAAAGGTGATCAATGCACACGTTTTCCTCTTGACTGTCCTCAAAAATGTGGAGTGCAGATACCCCGAGAGGAGATGGAGTCCCATGTGAAGGATGATTGTATGATGACGATGGTGGTCTGTCCTTACGAGCGAGCTGGTTGTACCTTCCATGACACAAAGAGTAATTTGACAACTCATCTTGAGGTCTCGACTGAGGAGCACCTGAACAAGACATGGTCTATGCTGTTAAAGACAAAAGAGCGATTATATGAGCTAGAGGCAATAGAAGATCAAAATGTGACATTGAAGAAAGACCTGGCAGAACTGCAAAAACAGTTTGAAGAAGTAAAACATACCGCTGCTAAAGGCCAGCAAGCGATCAGTTCACTGAATCATCTGCTGGGAGCTAAGAACGACCCTAGTGAGGGGTCGCCTGAGAAAAAGTTTGAACCACGAGTGCTCTTTACATCTCATCATTCATCTGTTCGTGGCAAAGAAAGACAACTTTGTGGTTGCGATTGCGAGGAAGATGATGCAGCATCGTCACGCATTTTCTTTGACAGAGATGAAGGAAACAGCAGTGGCAAACAGGACCGTCAAGATACTTTAATAGTGATGGAAATAACAACCGGTAGACGCCCCACAGCTGATCCCAAGCCTGAGTTAAAAGCTGGTGCTTCATACTTGTCAGAATATGTTGCATCAGAAAGTGAAAAGCAGCTATCTCCAAAGTCTACCGCAGAAGAAAAACCCAAGACTCCTCAACTTGTGTGGCATCAACCAAGAAGCAGAAGAGCTCAAGTTTCTTTGGAGCAACAGCCGTATGAGGGGACACACAGACTTTCAACTAGAACGGAGTCTCAAGGATCTTTAAGTTCTAGTCTTGACAGTCTTGAAGGCACAATATTCCTTAAAAGAGAAGGGACGGTGATTGATATGACTATTTATCGCCAAGAGGGAAGTCGAGGCGCCAAGAGAAACCCAAGAAGCGCAAAATTCCCTTCAATTTCTAGAAAGAGGAATTCTTTGAAATGTTTGCCGCCAATTTACGAGATCGACGAAGATTGCGAAGAAGTCGCCATTTTAGATGCTAAAGACAAACACAATCTTCAAGCTGGCAGATTAGGAAAAGTTTGTCGCGACTATGATGACAAATGTTACCAAGTAAATGCCATTGTGCCTTATGGAGAACATTGGGAGGTAAACCAAACGCGGAAACAACAGCAGAAATATCGTGAGTTTCCTGCACAAGACAGAAATGAGACTTGCGGTTATCATAAGCGACATCTTGGGCGCAATTCATCTGTTAACTCTCCGCACGCCGAGCGAAACAACCAGATGGTGTTTCCAGACTTTTTTCCTCCAGGGATGCACGTTCATTGCGCGCAAAACGCACTTCCAGAAGCAAGCAAAGGACTGTACATGAAAATTATGCAAGTCGAGGCTGAACTGAAGCACGCAACGAACATTTGCAAAACCAACAAGACAACGAGTAATAACTCCAGTTATAAACAGCAGAATTGGATGCAGTTTTTTGACTTTTACACGGATGAAATACTACACATTGACGAGGAGAAATCGGTGCCGCCATCAACAAAGAGAAAGTCACAAATAATGCCTTCATCTCACATAACCGAGGTTCTCGCTAATCAGGAATTGAGTCAAATGAGTGGGTACTTAAAGTACAAGAAGGGATGGCATGGATGGAAGAAATTGTGGTTCATGCTAAAAGACAATGTTTTGTACGGGTACAAAGCTAGCTCGGTGATGACTCATGAAACTCTGCCAGTACTTAGATGCCAAATCGAACGGTCGGGTAAGGAAGGAGATTACTGTTCATTCAAACTGAAACAAAAAGATATTCCATCCGTAGTTTTCAAGGCAGATGACGAAATTTCAGGAAGAAGGTGGATACAAGAACTTAAGAAAACACAACAGATCGAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DL4	TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1
Q3ZCC3	TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1
Q6DJN2	TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013062 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21363 all species →	TRAF3_RING	TNF receptor-associated factor 2/3/5, RING domain	Domain	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR049440 all species →	Domain	TNF receptor-associated factor 3/5, RING domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7355995.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.