Gene detail

Detailed information of KAJ7363302.1 in Desmophyllum pertusum

Genomic Location: MU827306.1:2777941...2793554
NR annotation: KAJ7363302.1, Rho guanine nucleotide exchange factor (GEF) 17 [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7363302.1

ATGGAGCAATGTTCCCGAGATCACAAAGAAAAACTGACCCTTCAAGACTTGATGATCATGCCAGTGCAAAGAATTCCACGATATGAACTGATACTAAAGGACATGATAAAACACACTCCTCATGATCACCCTGATCACGGCAGTCTTCAGCTCGCACTGGGAGAGATAAAGACGTTAGCAGATAGAATGAACCGAGGAGAGAAGGAGGTCGATCAAGCAGAAAGAGAGGCCGAGAGGCTGCGTGATCTTGAAGCAACTATTGAGGGGATGGCAAATTTGGTGACTCCCACTCGACGATTAATACGTCAAGACTTGGTAGCTGAAGTGAAAGGAAATATGACCAAGAAAGACCGATGCCTGTTCCTGTTTAACGACATGCTAGTTTGTGCAACTGTCAAGCGAAAGGCGAACGCTCTCAGAAGAGGCTCACTAAGCATATTTTCTGGGTCTGGCACAGAATTCAACAAATACAAACTACTCTGGAGACTACACCTTGATGATGTGGAAGTCTACAAAACATCTCCTGAAGCCCAGAGACGGAACAGTCTGGAGAAGCAGTTAGAGAAACTTGACAATGATATGTCATTGCTGAGTAGGATCAGCATCTTGTCTGATACTCTAACAATAACACACATGACCCTAGATGGAGCTATCCGAGAACTGATGAATGAAGTCAATCGGCAGATTACTGAGAAGCAAATTCCATTACAGCCTTCTACTTCGACAAAGTTAGAACTACATGTTACACAAGCAGAGGAGGATGGCCCTGAGGAAAAAGATTTTCAGTTTTTGTTCTTGGAAACAGAAATAAAGAATTCCTGGGAAGCGTACTTTGAAGATGCAAAACAAAAACTTGCCTATGCCAAAGACACATTTCCTCCTGAGTTTCAATACTGTATTCCTATCAACAAGACAAGAAGTGGAATGCAGTTCACTTGTGCATCACCCTGCCAAGCACCTCACATGTTGGACAGAGGTAATCATTGTGGTTCAGGAGATGTCTGGGTTTGTAACAGTGATGGTTATGTGGGACAAGTGTGTATTCTCAGAATGGGATCTCAAATTCAGCCGTTCAGTTCCATTACAGTCTGCATGTCACGAATCCTCTGTATCTCTCCTGTGCCCGGCACCAAATTCAGCGGCTTGGAAGCACTCCAGTCTGAAAGCGAAACCAAATCCGACACTCATTCCATCTCACTGGGAAGCGAAAAGAGCAGCAAAACGAATACAAACCCCAAAATCTCACGCTCAGGTTACGCCAGCGACGAAGATGTCACTGGACCACAGAGCATCATGGCTTTCGACAGCAGCTCCGAAGACGAGGAGGGACTGGGTCAAGAGAGTTTTCTTGGCGGGAAATTCAACGACGGAAGCTCGCCGTTCGACGTCGACGGCCGCCTCAGTCCTGAAGGCAGCAGCCTGGGAACCACCGGAAGTGCTGACGGCATGGACAGCAGTCAAGACGAAAATGTGTTTGAATTCGAGGAAAATGACTCAAGCTGCGATGAGATGAAAGCTAAAGGATCCCGCAAGCATTCCGGCAAGCGTAGATCTCGCACCAGTAGGGAAGATCTCAAAGACAGCCTGTCGGATATTGTGAATTTTGATACTGATGAGGCATGTACAGTGTGGTTGGGTACAGAAGATGGATGTATTTTCGTATACCCGGCGAAGGAAGCCCAAAATAAGAAATCAAAGTTAAAGCTTCAGCATTCTGGATCAATTCAGTGCATTTTGTATGTTGATAATCAAGTCTTCATGTCACTATCAACTGGTCACTTGTATATTTACAGAAGACATCCAGGTTGCGCGTGGGAAGTAGGCAGTCCCGTGATGCTTCACATCGGAGAGTCGGCAGCAGTCTCCTGCATGACAGCTATTCACGGTCGGCTGTGGTGTGGCCTGGGTTGTAGTGCTGTCATTGTCAATACAACCACTTTAGCAGTCGAGACGTCGTTCAGCTGCAGCTTGGACAAGGACCGCGCTGTGTACCGCATGGCAAGCTCTGACATGGGTGTGTGGATTACGCTCCAAAGTTCATCCGTTGTGAGGCTTTTTCACGCCACGCGGTACGAGTGTCTGGCAGATGTTGACGTAGCACCTCCCGTACACAAAATGCTCCAAGGTTCTGATGCAATCATCCGCCAACACAAAGCAGCTTGTTTGCGTGTCACCGCTCTGCTCGCCTGCAAGGATCTCCTGTGGATTGGCACTAGCGCAGGCGTAGTGTTAACATTACCGCTGCCAACAATCACCGCCAGCACTGCTTCTCTGCGCAACTGCCCATCAGCCACAGCTTCGTTCCACGGGCATACGGGACATGTGCGTTTTCTCACTGCTGTCGAGGTTCCAAAAGAAGGAGCGCAAGACAGCACCAACGATAAAGGCTCCAGCACTACCATAAACACTTCTCCTACAACTACAACCGCGCCTCTTGCGCCGGGCACAACCGCTGGCCGGGACGTGTTGATTATTAGCGGCGGCGATGGTTATGAGGACTTCAGAGCAAGCTCCGCTAGCGAATCCGCTGGACGAGATGACAGCACAAATCATCTCCTTATTTGGCGTGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PE2	Rho guanine nucleotide exchange factor 17 OS=Homo sapiens OX=9606 GN=ARHGEF17 PE=1 SV=1
Q80U35	Rho guanine nucleotide exchange factor 17 OS=Mus musculus OX=10090 GN=Arhgef17 PE=1 SV=2
Q21653	Rho guanine nucleotide exchange factor osg-1 OS=Caenorhabditis elegans OX=6239 GN=osg-1 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003382 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19057 all species →	PH_19	PH domain	Domain	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR039919 all species →	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12877 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7363302.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.