Gene detail

Detailed information of KAJ7370898.1 in Desmophyllum pertusum

Genomic Location: MU826854.1:393511...417231
NR annotation: KAJ7370898.1, DNA repair protein rad50 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7370898.1

ATGTCGTCCTTAGAGAAGATGAAGATTCAAGGAATCCGTAGCTATTCTCATTTAGAGCCAAGTGTTATTGAGTTCCAGAAGCCATTGACATTGATTGTTGGACCAAATGGAGCTGGAAAGACGTCAGTTATAGAATGCTTGAATTACATGGCCACAGGAGACATGCCTCCAGGGAGCAAACAACAAATGTTTGTTCATGATCCAAAGGTTGCTGGTGAACATGAAGTACGTGGTCAAATTAAGCTCAAATTCAGAGATGTCACTGGTAGTCCTATAGTTGTAACACGGACATTGTTATCTCAACAAAAGGGTAAAAAGCTAGAAACAAAGACAATGGAGGGAAACATCATGCGAGAAGTCCACGGGGAGAGGCGAAGTTTGAGCTCCAAGTGTGCTGATATCAACAGAGAGATGATTTCATTCCTTGGAGTATCCAAAGCTGTGTTAGATAATGTGATTTTCTGCCATCAAGAAGAGTCTAACTGGCCTCTTAGTGAGGGAAAAGCGCTGAAACAAAAATTTGATGATATTTTTGCAGCCACAAGATACATAAAAGCTTTGGAAGCAATTCGCAAATTTCGACAAGAACAGACCCAAACTGTGAAAGAGTATTCCATAGAATTGAACCACTTAAAGGCAAACAAGGAAAAAGCAGAGCAGATAGCAGGTGAAATGACAGAAACCCAAGGCAAGGTTGAAGCAACCAAAGATACAGTCAAAGGTCTGAATAAGAAACTTGAGCCAGTAGAGCTGAGGCTAGCTGAGCTTGCAAGCATTGCAGATGATGTATTTCAGCTTGAGAAAAAAGTTGAGTCGTTGTCGACAGAAAAGAAGCAACTCTTCAAAGTAGAGGTGGATCTCAAAGACAAGATCACCAATCTCTTCAATGGATCTGTAGAGGAACTGCACCAGATTTTTTCAGAGTTTCAAACACGAGTCATGGAAAAGGAAAGAACCTTGAGAGATGATGAAGGTAAATTACAGAAGTTGAACAAAGACCAGCAAATACTGACTGCTGACCAGAATCAGCTGCTGTTGGATCATGGGAAACTTGAACAGAAAGCTCAGAGACACAAACAGAATCTAAGTGATAGAGACCAGGCCATCATAGATCTTGCTAAGGAGTATGACTTCAGAGACTTTGAAAAAGGACCCTTTCCCGAGGACAGAGTAGATCATTTCGTTGGAGAATTGAAGAAGAAATATCAAACCGTTATTGAAAAACACAAAGCGCCAAAGGGTAAGCAAATGCAAGCATTTGACGAGAGCTTGAACAAAGTGCAGAGGAAACTTGACGATATGAAGAAAAACCAAGCGCAGTGCGAGGAAACTATTCGACTCAAAAACAAACTTATGAGGGAAAATCAACAGAAGCTCAGGCAGATCGGCCAGGAATTGAGTAATGTGGATGCTTCAGCTAACAGACTGAAATCACTGGAGGAAGAGCTGCAGCGGGCGGAAAGAGAGCTTGAAGGTGCTCAAGAAAGTGGCAATGTTAATGAGTTGGGCAAAGATATTGACAAACTGCAGGCTGAAAAGCGTAAAGTTGACAATGAACTGCGTCAGTTAAGAGAAGAACAGCAAGCGATGCACATGCAGTCCACAACACAAGCGAAACTGGACATGCTGTCCAAAGACAAGAGCAGCAAAGAGGATGCTATTCAGAAAATTATGGACCGTCATGATGAAGATCTGAAATCCACGCTGGGCACACGTGGCACGTCAGAGAGCCTCTACACGAGATTACAAGAACACTTGCGAGTGAAGGAACGAGAGTTGAAGGAAACGAGAAACAAGCTACAGAAACTGAAACAACAGCTGTCTTCCAAGCAAACACATAAAAGAATGATCACAGAAACCTTACAAGGCAAGGAGAATCAAGCACAGCAGCATAGAAGGCAAATTTCTGAAGCCTGTGGAGAGAATGACTATAACACCACAAGAGAAGATATCCGAACTAGCATCGCCACACTACAAGATGAACGAGGCATCATTGGCTCGTTGGAGAAGATCTACTCTAAGTATGTCTCTAAACTGGAGGGTGAAGATGTGCACACAAGTGGCTGTCCTCTGTGTCATAGGACGTTTGACAGCAACAGGCAGATTGCTGGTCTTGTCGCAGAGCTAAGAAATAAAATTCGCACTCTTCCAGAGAAAAGAGTGTCAAATGAAATGAATCTTTCTAATGAACAACAACGCTATGATCATATTCTAGAACTGGCACCAGCTAAAGAAACTTTGGAATCTCTTGAGAACAATGAAATCCCTGATGCTAAATCCAAATTGGAAGACATGGAAAGAGACGTGCAAAGAATTGAAGACGAGATCACAGAGCTGGAAGATCTTCAGAGTATAACTGAAAGCGAGGAACAGAGTGCTCGAGAAATGGAACCAGACATTCGTATGTTGGACAAATACAAGTCGGAACTGAAGGATATGGACAGGAATATATCTCTGCTGCAGTCTAAGCTTCATGGAGTTGCTCCTGGACGTACCATGCAGTCTGTTTCTAACGATATAGCAGACAGACAAGATCGATCTGACACTCTCAATAACAACATTGACCGAAAAAGAACTCAGCTGAGCCAACTTCAGCGGCAGCTGAGTGAGCTGGAGAAAAACGTACATGAACTCAAGTCACAGAAGCTCCGACTGAAAGCCCAGTTACAGACGAGAACACACTTGGAACAACAGAAAGCTGAACTCACCGCAAACAACAGTGCCTTTACAAGAGAGATTAAGGAAGCCGAGAAAGAACTAACTCCTATTGCGACCAAACTTGAAGAGCTCCAGGCTGATAAACAAGTCGTTGTCGATCAGAAGGAAGCTGCAGACGATGAGAACCGCAAGATGCTAAACGAAATAAGAACAAGTGGAGACAAAGTGCGTGAAAGAACCGCTGAAATAAGACGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIL8	DNA repair protein RAD50 OS=Rattus norvegicus OX=10116 GN=Rad50 PE=1 SV=1
A0A1L8GXM0	DNA repair protein RAD50.L OS=Xenopus laevis OX=8355 GN=rad50.L PE=1 SV=1
P70388	DNA repair protein RAD50 OS=Mus musculus OX=10090 GN=Rad50 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001857 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476 all species →	AAA_23	AAA domain	Domain	Interproscan
PF04423 all species →	Rad50_zn_hook	Rad50 zinc hook motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004584 all species →	Family	DNA repair protein Rad50, eukaryotes	Interproscan
IPR013134 all species →	Domain	RAD50, zinc hook	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729 all species →	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18867 all species →	RAD50	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003691 all species →	Molecular Function	double-stranded telomeric DNA binding	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0030870 all species →	Cellular Component	Mre11 complex	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051880 all species →	Molecular Function	G-quadruplex DNA binding	Interproscan
GO:0070192 all species →	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan
GO:0090305 all species →	Biological Process	obsolete nucleic acid phosphodiester bond hydrolysis	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7370898.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.