Genomic Location: MU826835.1:656265...657669
NR annotation: KAJ7372625.1, hypothetical protein OS493_017896 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families
| CDS |
| KAJ7372625.1 |
| Protein |
| KAJ7372625.1 |
| UniProt accession | Description |
|---|---|
| B4F7A1 | Complex III assembly factor LYRM7 OS=Rattus norvegicus OX=10116 GN=Lyrm7 PE=3 SV=1 |
| Q9DA03 | Complex III assembly factor LYRM7 OS=Mus musculus OX=10090 GN=Lyrm7 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009450 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05347 all species → | Complex1_LYR | Complex 1 protein (LYR family) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045298 all species → | Domain | LYRM7, LYR domain | Interproscan |
| IPR050435 all species → | Family | Mitochondrial Zinc Maintenance Protein 1 / LYRM7 | Interproscan |
| IPR008011 all species → | Domain | Complex 1 LYR protein domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46749 all species → | COMPLEX III ASSEMBLY FACTOR LYRM7 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0034551 all species → | Biological Process | mitochondrial respiratory chain complex III assembly | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0044183 all species → | Molecular Function | protein folding chaperone | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18170 | LYRM7, MZM1; complex III assembly factor LYRM7 | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
