Gene detail

Detailed information of KAJ7372790.1 in Desmophyllum pertusum

Genomic Location: MU826834.1:101020...110265
NR annotation: KAJ7372790.1, hypothetical protein OS493_016709 [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7372790.1

ATGCCGCGTGGTACATGGACATGTATTCATCTTCCTCGTTTTACAACGCTGGTATTTTTAATCTTGATTTTAAATGTCGGCGTTTTTATACTGTTGAACTACTCTATACCACACGAGAAGGATGGATTAGCCAGTCATTTATCAAAAAAGGCCAAAGAGAATCGTAAGTTGAATATAAATCTGAAAGAGTTCAGTTCAAATCAGGACAAAGATGACATTCTGCCAAAAGACGAACATCAACCACTTCATGATACTTACACGAAAAGTCCCTCTGCCAGCAATCATTCCAGTTCTGACAAGTCAGCATTAAGGAACTTTGAAGGAGAAAGTAAACAAAGTGAATCTGAAGATGACCAAAAATTGGCATTCAAGAGTTTCACATCGTCGAGCTATCGAGGTGGAGATAGGTTAGAGGGAACTACGAAGGAAATCTCAAACAATTTTCTGTTCAAACAAATTTCCGTACGCCCAGTGAATTCCATCCTTGTAACAAAAACGTTTTCTAGTAAGTATAAAATGAGTAGTCAAGATGTGCAAGACGTGAAGCCATACGTAGTGTCCTTCGATACACAGAAGAATAGTTCTTCACATTACGTTCAAAATGATTCTCTAATGGAGAAAATCAACAAGAAAGAAATATCAGCTACGACAATAATTAAGTCAGAATCTTCAAGCAGTTCAGTAAGTCCAGAAAAGGTTATTCCACCAAGCAAGGAAAGTATCTCAAAAATAGGTACCGAATCTGTACATGTGAGCATGGCACATGTAGACACAACCACAAAACTTCTCACTCAAGAGGATTTAAACAGTATAGCAGAAAACATGGAAGTCCGCTTTGAAGTGTTGGAGAATCCCAGAACAGCAATAATAACTTTACGAAATAAAGGACTAGTACCAATTGAGAGAAAACAGTGGTCGATACACTTCTGTATTACAACTGGACTGGAACTCGGCCATCTTGTACACAGACCAGAAGGGTATGTCTTACCAGGTGAAAAGTCCATAAAACTCACGCATTTTAACGGTTGTGCTTATAAGTTAGAGCCCACAAGAGACTTCAAACCCATCCTTCCTGGGAGCTCGCTGGCATTTAAGGTCAATATTGGTCCAACAATAGCCAGAAGCGATTTGGGTCCAAAATGGTACGTTACTGCAGAGGGCCTACAACCAAGGACCATTTCGAACACTGCTGATGAGGACCTTAGCTTTGTGTTCGTTTCAGGGAGAAAAGGATTCTGGGATAGATTTGGAAATAATGATGTGGCCGATCTTGGAAAAGCACCACTTCTGGTGATTCCGACGCCTTTGATGATTGTGGGATTGAACGAGTCCAAGAAATTGTCCATTGATAGTAAATGGGTTGTGATTGGTGGGCCTGGAGTGGAAGAGGAAACAAGCTTTCTGGCAGGTAAGCTGCAGCTGCAAAAATCCCTCTCTCAAACAACTGGCAGAAAAGTCATCAAACTCACACTGGGTAAGGTACAACTGGCAATGCCAGAGTATAAAGAACAACCATCTAATCAGTCCTCCAGAGAGTCATACCATCTTCAAGTGTATGCCTCGGAACAATTAATCAACATCACAGGAACTGGAAGTGCTGGTGTGTTCTATGGTGTCCAGACCCTCCTCTCTCTCATGGACGATCAAGGCGTGGTTCCACAGGTGTCAATCAAAGACTCTCCTCGTTTCTCGTATCGCGGGTTGATGGTGGACGTTGCTCGTAATTTTCGACCCAAAGAAGAAATTCTGAAACTTTTGGACGTGATGGCGATGTACAAGATGAACAAGTTTCATTTTCATTTGTCGGATAATGAAGGATGGAGACTGGAGATACCAGGGATTGAGGAGCTGACCTCGGTTGGAGCAAGAAGATGCCACGACGAGCAAGAAAAAACGTGCATCATGTCTCAACTCGGTTCAGGCCCCGATACCAGCACCTCGGGCACTGGGCACTACTCTACCGAAGACTACAGAGAAATACTTCGTCACGCAACACAACGTCACATTCAAGTGATTCCAGAGTTTGATTTTCCAGGACACAGTCACGCAGCTATCAAAAGCATGATAGCTCGTCACGATAGATTGATCACGCAACAAGGAAACGAGAGAGAGGCTAAACAATTTCTTCTTAATGATTTCAAGGACGAATCGCGGTATCTTTCTGTGCAAATATTCACTGATGAAACTTCTAATTGTTGTTTGAACTCAACGTACACATTAATGGATTATATTCTGAGAGTGCTGGTCGATCTTCACCACGATAGTCAACCGCTGACCGTTTTTCACTTTGGTGGAGATGAAGTTCCCGGAGGAGCATGGCAAAAATCTCCCGCGTGCGAACAGCTGGCTAAGACATTAAACTTTCCATATAAGGGCATTCATACACACGATAAACTGAAAGAATACTTCTTGCAGCGTTTATCGAATATCACCGAACACATGAACGTAGGGATAGCTGGGTGGGGCGACTTTTTGTACAACAGTAAAACACGCACACTCGCACCAAGGGAGTTTTTCCCAAATAAGGAAGTGTACTCGTTTTCATGGAGCGTGACTGATGTCTCGAAACAGCATCGCGAGGTTTCTTTGATGGCTAACCAAGGATATAAGGTTGTCCTATCAAGCCCAGACTTTATCTATCTTGACCACCCTTATGAACCTGACTTAGAAGAGCGCGGGAAGTACTGGGCTACACCTTATATTGACACTCGTAAGATATTCAGCTTCATGCCTGAAAGCCTCTATAAAGATATCGACCAGATACAAAACTGCAATGGCTTGAACAAGTGTGTTGACGGAAGACAAAATGTCCTGGGTGTCGAGGCAGCGGTCTGGGGCGAGACAATAAGAACCGCTGACCACATGTACGCCATGCTCTTCCCTCGTCTTCTCGCTCTGGCAGAACGCGCCTGGCACAAAGCATCATGGGAGGACATTAGTGACAAGGGTGCACGAGATCGCGAGAAGACTGGTGACTGGACGAACTTTGCTAACACGCTGGGTTACAAGGAACTGGGTCGGCTTGACAAGATGGGCGTGGCGTATCACGTGACACCACCTGGAGCAAGGTTTATAGGAAATAAGCTGGACACCAGAGCTGCGCTTCCTGGCCTTAAAGTTGAGTACTCAACAGATAATGGAATAACGTGGAATGACGTCACAAGTCACAAGGAAGTTAACGGGAAAGTAAAGTTAAGGACAAGATCTGCTGACAATCAACGCGTGAGCAGAGAAGTTGAGGTTACACCACCGGCACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAACACAAACAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAAGATAAGCAACGACAATATTGTACCTCAAGCTGAGGTTAAACCACCGACACCTGCACGTCCTGCACCAGTAGCAGTGGAAAAGACAAACAACGACAATATTGTACCTCAAGCTGAGCCGGGCAAACACGAGCAACAAAAAGACGAGGATCGCACTGAACACATAAAAACTGATGTGGAATCTCAGAGAAACCACGCCGAAAGTTCTAAGATTAAGGAAGATAGGATTGAAACTAGAAATGACCGTTCTGGAATTAAGAAAGAAAGGCCTGAGTTTAAGGAAGAAATTAATGAAATTAAGGACGAAAATTCTGAGGTCAAAGACGAAACTTCTGAAATTATGGAAGAAACTTCTGAAATTAAGGAAGAAACTTCTGAAATTAAGGAAGAAACTTCTGAAATTAAGGACAAAAGGACTGATATGAAAGACGAGAGGTCTGAAATTAAGGAAGAAAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04786	Beta-hexosaminidase OS=Vibrio vulnificus OX=672 GN=hex PE=3 SV=1
Q54468	Chitobiase OS=Serratia marcescens OX=615 GN=chb PE=1 SV=1
P13670	N,N'-diacetylchitobiase OS=Vibrio harveyi OX=669 GN=chb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000952 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02838 all species →	Glyco_hydro_20b	Glycosyl hydrolase family 20, domain 2	Domain	Interproscan
PF03174 all species →	CHB_HEX_C	Chitobiase/beta-hexosaminidase C-terminal domain	Domain	Interproscan
PF03173 all species →	CHB_HEX	Putative carbohydrate binding domain	Domain	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015882 all species →	Domain	Beta-hexosaminidase, bacterial type, N-terminal	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR004867 all species →	Domain	Chitobiase C-terminal domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR004866 all species →	Domain	Chitobiase/beta-hexosaminidases, N-terminal domain	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR008965 all species →	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR025705 all species →	Family	Beta-hexosaminidase	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR012291 all species →	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600 all species →	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004563 all species →	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0030247 all species →	Molecular Function	polysaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12373	HEXA_B; hexosaminidase	EC:3.2.1.52	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.