Gene detail

Detailed information of KAJ7372965.1 in Desmophyllum pertusum

Genomic Location: MU826833.1:1715563...1722940
NR annotation: KAJ7372965.1, rRNA-processing endoribonuclease [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JJT0	RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus OX=10090 GN=Rcl1 PE=2 SV=1
Q2KHX8	RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus OX=9913 GN=RCL1 PE=2 SV=1
Q9Y2P8	RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens OX=9606 GN=RCL1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR000228 all species →	Family	RNA 3'-terminal phosphate cyclase	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096 all species →	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7372965.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.