Gene detail

Detailed information of KAJ7372982.1 in Desmophyllum pertusum

Genomic Location: MU826833.1:2034804...2056297
NR annotation: KAJ7372982.1, mutS protein [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7372982.1

ATGAGTTCTTTTCAATATGCGTCAACGTCGACATCTTCAGAAGCATTTTCCACGCCGACTGGTGGTGCAAACGCTTTTCCAAGGAGATCAGGCTGGACTTCTTCAACGGCCGACAACGAACGTAGCGTGAAAAGGCAGAATTCAGCGGAGCATTCGGGAGCTGCATTTGTTAAACGTCAAAGGACTCCCTCTTCGAGTCTGACAACGAACAATGGACACGTCTCCACAAGTGTCAGGCATTCTTCAGGTACGGAATGCGATGACAGAGGCGGAGGGGACCGGGAAGATCTCGACATGAACGACAATGACGTTGTTCGTCAGAGAAATCTTGCCGTTATACAAGATGGTAGTCCTGCAGTGTCAGAAGTGAAGCGAGTGTTGTCAGTGGTTTGGAGTAAAGGAAAATTGGGTTCTGCTTACTACGACACAGAAACTTCACAGCTGTATCTACAAATGGATGTTGTAGAGACAAATGATTTTCAGTTTCTTAAGAGAGTGAAGGAGCAAGTCCAGGCTGAGGTCATCATTACAAGTGCTGCACAGGATGGGAGGTTACTCAAGATCTTACATGGGCAAGAAGGTGAAAACAATGATGAAGTGATTTGTGAGACAACAGAAGTTGAAATCCTTCCTAGCATAGATTTTTCTTATGAAGTGTGCAAGAGACGGATCACTGCACTGAATGCTTGCCTTCCTGGAATCCCACAGCACTTCACAGATAACGAGAGAGACATACATATGAGTTCACTTGTACCATTTGACAGCATTAGCATGGTACGAAGCGCTGGTGCATTGATCAAGTACATAGACAAGAAGAGAATTGGAGTTGAAATGGAGGATCCTGAAGTGCGAGTTCCCATTATGGGACTTAAAGTATTTTCTTTGAGTGATCTTCTCATTGTAGATAACAATACTTACAGTGCTTTGCAGATCTTTCAAAAGGAGAGTCACCCATCTGTATACAAGATGGGAGCAGGGAACAGTGGTGCTAAGGAAGGGCTCTCTCTTTTTGGGATCACAAATAGAACTAGATCTGTTATTGGAAGTCATATGTTGAGGATGTGGTTTTTACGTCCTTCAAAAGATATCACCCTTCTACAACAAAGACAAAAGGCAGTGTCTTACTTCATGAACATAAGAAATGCAGAACTGGTGGCATCTCTGCAAGATTGTTTGAAGCATATCAAGAACGTCTCTGGAATACTATCCAGAATGACAACAGCTCAAGCATCTGTTGGGGACTGGCAAGCACTGTATAAGACAGCCTATAATGCGACCTACATCACCGATCTATGCAGAAGAATCCCAACGGAGATTGAAATTGCCAAAAAGGTTACTAAAAGTTTTACAGATGAATTGCTTGAAATTGGTAGTCTGATGAGTAAAATAATCGACTTTGATGAATCAACTGAGCAGAATCGGTTTGTTGTTAAACCTGGAGTCGACCCTGCTTTGGATGAAAAGAAAAGAACTTACAATGGCCTTCCTGACTTCATGACAAAAGTAGCACGAGAAGAACTCAACAAACTAAGTTCTTCCATCACTGAATGTAATGTCATTTACCTGCCACAGCTGGGCTATTTGTTAGCGATTCCTCGGTCACCAGAGATGAAGGAAGAAAAGGATTTTGCAATAGATGGTTTGGACTTTGTGTTTCTTAGCAACAACAGGGTTCACTACAAGAGTGCTCGCACCAGAGAACTTGATAACCTTTTAGGGGACACGCAGTGTGAGATAACAGATCATGAGACTGCTATTATGCATCGCCTACAGACTGTTATTCTTGAACACACCCAAGTGTTGATGGATGTCATGGAATGCTGTGCAGAGTTGGACTGTTTGATTTCTTTGGCCTTGTGTGCTAGAGAGAACAACTATGTTTGTCCTCAGTTGACTACAGACTCAGTCTTAAACATTGAACAAGGAAGGCACCCTTTGCAGGAGCTCTGTGTCAATCTGTTTGTTCCAAATAACACTGTGTTTGACAAAGACAGAGGACGGATGAAAATTTTGACAGGACCCAATGCCAGTGGTAAAAGTGTCTACCTAAAGCAGGTTGGTTTGATTGTGTTTCTTGCGCATATCGGGAGTTTTGTGCCTGCTGAGTCGGCCACTGTTGGTATCACGGACAGGATATTTACACGAATACACACAAGAGAAACCGTCTCAGTTGGTTTGTCAACATTCATGATAGATCTAAACCAGGTGGCCACAGCAGTGAATGGAGCCACAGAGAATTCATTGGTCATAGTTGATGAGTTTGGAAAAGGAACTGCTACGATCGATGGTTTGTCATTGTTGACTGCCACACTCCGCCATTGGCTCAGGCGTGGGACAGGCTGTCCGAAAATTCTCGTCTCCACGCACTTCCATGGCCTTGTCAAGCAAAACTTGCTGCCGAAAACACCTCTGGTTACATATCAGACGATGCAAGTGATCGAAGAAGCCGAAGATATTGCGTTTCTTTATCACCTCATTGACGGTTACGCAGAGAGCAGTCTTGCGTGCCACATAGCCTCCTTAGCTGGATTACCAGATGAATTGATCAAGAGAGCCCACCAGGTGACAGAACTTACAAGATGCAATAAACCAATCCCTAGAAAGGACACTAAAGATGACGAAGAACAACGCAAAAGGCACAAAGCCATCGTCACGAAATTCTTGGCGCTGGACTTGGACAACGATGACCCGCAAGCATTTCTGTCTGATCTCCTAGAAACGTTTGATGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QUM7	MutS protein homolog 5 OS=Mus musculus OX=10090 GN=Msh5 PE=1 SV=1
O43196	MutS protein homolog 5 OS=Homo sapiens OX=9606 GN=MSH5 PE=1 SV=1
Q6MG62	MutS protein homolog 5 OS=Rattus norvegicus OX=10116 GN=Msh5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002875 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05190 all species →	MutS_IV	MutS family domain IV	Domain	Interproscan
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF05192 all species →	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011184 all species →	Family	DNA mismatch repair Msh2-type	Interproscan
IPR007861 all species →	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR007696 all species →	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051026 all species →	Biological Process	chiasma assembly	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08741	MSH5; DNA mismatch repair protein MSH5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.