Gene detail

Detailed information of KAJ7374404.1 in Desmophyllum pertusum

Genomic Location: MU826828.1:3138187...3142075
NR annotation: KAJ7374404.1, Nucleic acid dioxygenase alkbh1 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13686	Nucleic acid dioxygenase ALKBH1 OS=Homo sapiens OX=9606 GN=ALKBH1 PE=1 SV=2
P0CB42	Nucleic acid dioxygenase ALKBH1 OS=Mus musculus OX=10090 GN=Alkbh1 PE=1 SV=1
Q54N08	Alpha-ketoglutarate-dependent dioxygenase alkB OS=Dictyostelium discoideum OX=44689 GN=alkB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13532 all species →	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037151 all species →	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan
IPR027450 all species →	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan
IPR004574 all species →	Family	Alkylated DNA repair protein AlkB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16557 all species →	ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0035513 all species →	Biological Process	oxidative RNA demethylation	Interproscan
GO:0035515 all species →	Molecular Function	oxidative RNA demethylase activity	Interproscan
GO:0035516 all species →	Molecular Function	broad specificity oxidative DNA demethylase activity	Interproscan
GO:0035552 all species →	Biological Process	obsolete oxidative single-stranded DNA demethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7374404.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.