Gene detail

Detailed information of KAJ7376186.1 in Desmophyllum pertusum

Genomic Location: MU826409.1:169467...188756
NR annotation: KAJ7376186.1, endosomal transport [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAJ7376186.1

ATGGTATTGTTTGTTACTGTCCTGCGTCACGCCATAGAACTTTTACTACAAGAGTCTGCTAACAAGTTGGATGATAGTTGTGTAAATAATTTACTCACAAGTCGCACAGAACCACTCAAGCCATTGTATCTACCCAAGCAAGCCTTGCAGCAATTGTTACCAGTGACCATTCAGGCCAAAGCCTTCAGCTCCAGGTCGTTGACTTTACCAGAGAATGTGGATACCAGGGAATTGAAAAGGGCAATTTCTTTCTTGATGGACAACATTGGTTTTCTTAACACTACTGGGCTCTTCCATGTCATGTTTCAACTCATGCAATGTGTCAAACTTGCAGAACTTGCGCCAAATACCTTTAAAATCACAGTTTATCACCTGTGGTTTCTACGACTGATCTGTCTGTGTTTCATGGATTTGTTTCTGGAAGGCGACGAACTTCTTCTACTTCAAAGAATGTTGTTAGTGTCAAGTCAACCTACACTTCCACAAGGACAGCGCTTGTTGTGTTTTGAATGGCTTATGTACTTCCCCACTGACGAGGACACACCTGAGTTTCAACCAAGTGTTCCTCACTGCTTGGATTATTCACAGTTCAACTTCTTTTACCCATCTGTGTTTGATTCTTTGGATATCACACTGGTTAAACTCAAGGTCTTATGTCTATGCTTGGACCATGAAACGTTAAACTTACCAGGTTCCATGGGTGTTCCGTTGATGCAGTGCCTTGTTCCACTCCTCAAGAGAGTCCAGCAAGGTATCGGAGGGAAGACTGTAGTGGCGCTGTTCAGAAGTATTTTTTGGTATTACAAACATCACTGGGACTCGGAACTTGAACGGGAACTTTATAAAGCGTTTGCAGATCTTTCCAGGAAGTCATTGATTATCTACAAGCGTGAACATTTTTTGTTTTCTTGGCAGGCTAGTGTTGTCAATAGTAACAGATCACCCTCAGTCATACCACATACAGTGAATTTACTCAACTCTGTGTCTGTCATTACTCCAGATAGTACATTTCCAACTGATCTACTGAGATCACTGAGTGAACGTGTGGTATCCCAGTCAGTGGAGTCTGTTCTACCAAACCTCACACATCACCTCAAACTACTGTCTCTCGCCATGAGGGGTACTGATATATTCCCTACATGTTCTATTACATCATCACTCAAGTGCTACAGTGACAGAACTTGGCAATCTGTTTACTTTTTATTTGTGCAACATATCGGGACATTGACATTAGGGACCGTGCCAGATTTTTACTATTGTCTCCTTACCAATGTATCCAGTAAAAAGTGTTCCAGGATACTGGCGTCAGAAACGGCCAAACAGGGCCTTCCTCATATCATCGCTGAGGACATCACAACCAGTACATTCCCAGTTCCACCTCCTGTAAAACACGTCAGCACGCCATTTCTCAAGCTAACAAGGGTGCCGCAAGCCGAGTGTGAAGGTTCTCTGACTGATATGAAGTCCTCGGCAAGTGACGAGCTTAAGGAGTTTACCAACACGAGAGGTCTTTTGGATCAATACTTGAAGATGCTTGACGGAACCACATACAGCAAAGAAATACCCATAACTTACTACGTTCACTTTACGGAGTCTCCATCTTTGTCGATGCCAGCGATAATCTATGCTCTGGTCTTGAAATTTCATTCGGAAAGAAGATACAAGAAACTTGAAGATGTTCATATTTCCTACCTATCGGCCGCTAAGTCTACAACTCCTTCTGAAGGTTGTTGTCAGATAACGGTTAATTTCTGTCCTCTCGATCCAGTACCCGCGTTGTTTCAAGTTAGAGCGGTGTTTTGTGACGAGAGTGGTCTAACGTGTGCAATGAAATTGGACAATTTGCCGGTTCATTTTTCAGACTTGTTTATCTCTCTCCAAGTACCAGCTCGTTTCAAGACAGCGCCGCTATCCACGATTAAAGCAGAGCTTTTCTCCGTGTTATGGGATCACATCACGAAAGTTCAACACACCAGTGGATGCCCAACGGGAACTGGTGCTGAGTCCATAGTCTGCCTCTCAGTGGAGTGGAGCACCATGGGAAGAATCTTAGAGGAGCGTTTGCTTTCTTTGTTATGA

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21589	AP5B1_barrel	AP-5 complex subunit beta-1, beta-barrel	Domain	Interproscan
PF21588	AP5B1_middle	AP5B1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048980	Domain	AP-5 complex subunit beta-1, beta-barrel domain	Interproscan
IPR048979	Domain	AP5B1, middle domain	Interproscan
IPR038741	Family	AP-5 complex subunit beta-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34033	AP-5 COMPLEX SUBUNIT BETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030119	Cellular Component	AP-type membrane coat adaptor complex	Interproscan