Gene detail

Detailed information of KAJ7376654.1 in Desmophyllum pertusum

Genomic Location: MU826394.1:353726...355900
NR annotation: KAJ7376654.1, hypothetical protein OS493_033536 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAJ7376654.1

ATGCACAGCTTCTGTAAAAGTTGCATCGAGAGTCTCGCCGGAAATGTAGCTGGTAAAGAAGGGGTTGTCGTTTGCCCGATATGTTCCTCACCGAGTGAACTTGGCAGTAAAGGAATTGATGAGCTGCCGGTCAACTTTCTCATTGCAGTAACACTTAAGGATCGCAAATACGCGGTTGAAGAAAAGAAAGCTCCGATCAAATGTGGAAATTGTGAAGACAACGCGGAAGCTACAGGGCAATGCAGAGATTGCGCGGAATTCCTCTGCGACAAGTGTACGTCTGCTCATAGAAGAGTGCGTGTTACAAGGGAACATCAAATTATCCCTCTTAATGAGCTAACAACTAACGACGAGGAAAATAATAATAATTTGGAAAATCCCGATAACTGCTCGGATCACAGCCGCGAAGAACTGACGTATTTTTGCCAAACGTGCAACAAGCTCATTTGTCGAGAGTGCACGGTGTTGAATCACCCCAACACAACGCACGCATTCGAGCCGCTCAAAGACGCGTCCACCAAGCACCGACAAGAGATAACCGCACTGCTAGACGCGATTAAAATGAGGAGTCCCTTCGTTAAACGAGCTTTGTTGGAGATAGAAGAAGCGTGTGGGGACATTCCGCAGCACGCTCTTGCCATTGAGGAGCAAATTAAGAGCTCGACGGCCCGCTATATGCGCGCGTTAAAAGAGCGCGAAACACAGCTATTAGATGACTTGGACGCCATGAGAGAATACAAAGCAACATTGTTAGACCAACAAAAGGAACGCTTGTACAAAGGAATCAGAGATATAGAGAGCAATTGCGGACTGATTGAAAAGATGCTGCAACAAGGAACTGCCGCCGAAGTTGCCGGGGTAAAAGATTTTATGACAGGGCGATTACGCAGCTTAACAAACATGATTCAAGACATGTCGCCAACTGAAGGACCAGAATTTGATTACGTCACTGAAGAAGACTTGTTGTTTGACGTCATCAACCGAGGCGGCAAGATAGAGAGCAGCACCAGGCCTCCCGCTGTGCGACTTATCGGGGAGGGCCTGTACAACGCAGCAGTTGGCAAGACCTCAAGTTTCACACTGGCTGTGCGGGAAGGCGCATTGATAAACAAGCACGACCTGGACGTTCGAATCGAGACTCCAGATCTAGTGATCCTCACTTGTAACGTAACGGAGCACAGTTCACGCATTTACACGCTCAGTTACATGCCAAGAATTCACGGAGAACACGTGATCACGGTTCTGGCGAACGGAGAGCAGGTAGAAGAAAGTCCTTACACCGTGAACGTGAAGAAGGGACACATGTGCTTCGCCACCAAATCTCTTCCCGTTTGTTTACGTTTTGGTTACAAAGGGAAGGGAAGAGGCGAACTAAACAGTCCCTCTGACGTTGCTGTCGCATGTAACGGTGTTATAGCTGTAGCAGACACGCTGAACGATAGAATTCAGCTTTTCACAAGCAAGGGAGGTTTTTTGCGGCGGTTTGGAAGTCCAGGAGAGGATGTTGGCAAGTTAAAGTCACCGACCGGTATTTGCTTCTCTCAAAATGGCCAAATAGTGGTTGCCGATCAACAGAATAACCGCATTCAAGTCTTCAGTTTGGAGGGAGTGCTGTCTAAAGTGATCGTATGCAAGGGGCGTAATGCGGGGGATTTTAAGAATCCCACGGGTGTAGCCGTCGACGAGGAAGGCCAGCTACTGGTTACAGATCAACAGAACCACAGAGTTGTGGTGTTCAATAGCAATGGAGTCTACTGCAACCAGTTTGGATCTTTGGGGACAAAAGACGGAGAATTCAACAACCCTTCCTACATCACTGTCTGCCAAGATGGCGAGATTTTCGTCACTGATACGTCAAACCATCGAGTGCAAATTTTCGACCCGACCGGAAAGTTTCAACGAAAGTTCGGCAGACCCGGCACCGGGGATGGCGAGTTCCATTATCCCTCGGGAATAACAGTTGATTCATCCGGGTATATTTTCGTTTCTGATCGCACCAATCGCGTGCAAGTGTTTAACTCGCACTTGCGTTTCGTCACCAAGTTTGGCGGGAAACTGAGTGGCGACGGTCAGTTGAGCGGGCCGCTTGGGATTGACTACACTCCAGAAGGCCGGGTTGCTGTTGCTGACGCTGGGAATAACTCTGTTAAGGTTTTCTATTTTCCCAACGAGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
E7FAM5	E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio OX=7955 GN=trim71 PE=1 SV=1
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
O15164	Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan