Gene detail

Detailed information of KAJ7377589.1 in Desmophyllum pertusum

Genomic Location: MU826376.1:439170...446659
NR annotation: KAJ7377589.1, High mobility group [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010669 (this species only)
Transcription factor family	HMGA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02178 all species →	AT_hook	AT hook motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017956 all species →	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR000116 all species →	Family	High mobility group protein HMGA	Interproscan
IPR000637 all species →	Conserved_site	HMG-I/HMG-Y, DNA-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23341 all species →	HIGH MOBILITY GROUP PROTEINS HMG-A AND C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09283	HMGA2; high mobility group AT-hook protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.