Gene detail

Detailed information of KAJ7378386.1 in Desmophyllum pertusum

Genomic Location: MU826367.1:1048090...1061499
NR annotation: KAJ7378386.1, helicase [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7378386.1

ATGCCAGAGATAGCACCGTTAAGAACTCAACTGCCACCCAAAGATCACAAACTGAGTGATTGGGTTAGACAATACGGGCAGCTTATCAAGCATTCTCAGTTTCTTCGTGGCTTTTATTCAGAAGAAATCCTGAGCGAAATGACGAAAGACGCAAGAAGTTCAGAAGCCGCAGAATTCAAAGTGCAAGAGTCCGTTTGGTCCGAACTCTGCAATGCTGCAGAGTCTGGAGACCAAGCCAAGTTACACGAATTGATTTGTAACGAGAGCAATCACCCTCAGTTGGCTGTGGCAAATTCACAGTTTCGACGCATTCAGCCCAAGTCTCAATACGTCTGCAAAAGAGATCAACCAGGAGAAAACGCTGCGCACTTCTCTCTGGGGATGAGTTGCTATACACACTTCACGTCACCTATACGACGCTACATAGATATCCAAGTACATCGACTTGTGTTGGATTTAATCTCTCAAGGCCGCAATGCCAACAGACCTTCGAAGGACCAAGTTGCCAAGGTGTGCCGTCGTTCCACGTTTGCCCAAGACAACTCCAGAAAGTTTGACAAGGCATGCAGTAAAGTGCAGCTGGCCGCGAAGCTCAAGGAAAAAAGTCACGAAACCACAGCAGTCATTGCCATGATCGAGAAACAAGCACTTAGTTTGGAAATTCCGAACCAGAAATACAACCATCTCTCGGCACGACAGAGAAGGGTTCAATTGAGCGATCTTAATCTATTTACCTTTGATATTGGTCAGAATGGTTCCGAAATAGTCCTTACCTGGAAGCTAAGATTGTACATAGCTCCTAAAGAAAACATCATCGAGGAAGCCACAAAGGAAAGAGAGAAAGTCGTTGCCCTTTTATCTGAAGGATTGGTTGGAAAAGGAGAAGTCTTGAACTTGCCAGCAGAGAGTTGGCAGCAAATTTTGAAAGCACTTCGAGAAGGAAACTACAAAGCCCTCGCAATGTTGATTAGAAGGACGGAGAGATATCGTCAACTGCCGCCACGGTTACCTGGGTCAAACAGGTATAGCAAACCGTATAATAACTCCAAACCTGAAGCAAACATGGAGCACTTCTACGAGAAAAAAATGTCTCTGAGGACGTTTGATATCGTAAACGTTCAACTGACCGCACACATGACAAACGGAGTTTTCCATCCCGAAATTCAGCTCTTCAAGATCAATCCCAGCGTGCACATTTGCGTGGAGCACCGTAAATATCCTAGAGATTGTTTTGCAACGACATCAAGGTACCAAGCATCTCGGAAGAAGTACTCAAGTGTAGACAAGTACATTAATGCCTGGAAACCCGTCCTTGCCATGGAAGCTGCTACTGGAGCCGTGAAGGAAAGCGACGAGTTCACCATACACCACTTAATGGTTCAGTGGATAAAAGAGATCGGTGAAAGCCTGGAAGGTTCTTTCAACCTCCAAAAAGAATACTGCGAAAGTCGTCAAATAGAATTTTGTGCAGGAGATTTTGTTTGCGTCCACGTGCGGGAAGACAGGTTCATGAAGAATACACAATCGGGAACAGCTGCCACTGTGAGGAGCACATCACAGGTAGAGACAAATTCTTTGAATGAAGAAGAGCTCAACGTCACTCAATTAGCAGCTCCCTCGTGCTTAGCAAACAACTCCCGTCATGAATCCAGAAGTGCTTCACCGAGTTTCTGGGTGGGACACTGTGTCATCAAGCATGTGCGTACTAAGTTGTCGAATATGGACACTTTGATAGTCACGATGGATCTTCATCAGTCAGCATCTGTTTTTCCCGAGGAGCTGTTGAATGGAGGTGGCCACCAGAGTACCTTAAGCGTTATTCACCGGTCCCTTCCCCACAGGCGAATGTTTGCAGCTCTGTGTGACCTACGATGTGCCTCCCAACTAGCTCACTCCATCTGTATGGGACATGAGCCAGACCAAGAAGACTTCGGGGTCCTGCCTGATTCCAACCTGTCAATTAAGTGCGGATTTAAGCCCTTAAATCTGTACCAAGAAGAAGCAGTGAAAGAGGCGCTTGTGAAGCCATTTACCCTTGTTCTGGGTCCTCCGGGTACTGTGCAGGCAGAGTTAAAAGCACCTTCACAAGTCATATACTGCGGACCCTCCAACAAGTCAGTGGACGTGGTAGCTAAATACATGCTGCAAATTCCTGGACTCAAGATCATCCGCGTGTACGGAGATCTTAGGGAACAGGCAGAGTTTCCAATCCCTAACAAACGTAAACATCTGAAAATATCAACCGACGATGAGGCTCAGATATCCAATAAGGAACTGAAGGCAGTGTCTCTACATCACATCATTCGAAGTGATAAGTGTCGGTTTGCCTCCCAGCTTCAAGATTATGAGAGCGCGTTTAAAGCTGATAGGGAGGAAGGCGTCAGGTCCAGCGACAAAGAAGTTGAAGGCTACCGTAAGTTAATTGGTGAGGCCGAAGATTGGGTACTTCAGTCATCAGGAGCTCAGATTATCTTGTGCACATGCGCAACTGCTGGTAGTCCAAGGATAATGAAATCCTGCAACAACATCCAGCAGTGTATTGTGGATGAATGTGGCATGTGCTTGGAACCTGAATCACTCGTGCCGATCACGTGCTCGGGAGCGCAACAAGTGGTTCTGATTGGTGATCACAAGCAGTTACAGCCCGTCATCCAGGACCACGTGGCAAAAACACTCGGCTTGGGCGTGTCTATGTTCGAGAGGCTTTCTAAACGAGCTAAGATGCTGGAGTTGCAATACAGAATGCAAAAAGATATCTGCAAGTTTCCGTCAAATTACTTCTATGAGGGAAAGTTGAAAACAGATACATCTGTGCCGACTCGAGACCCTCGTTTACAGTCCTTTTGGCCAACGAACGTCCCCATGGCATTTTGCCATGTCGAAGGTGAAGAGGAAAGTAGCGCCATTAAGACAGCACAGAGTAATGAACAGTCGAAAGCAAATGAGAAGGAAGTCAGAAAAGTGGAACATGTGGCGAGATGTTTAGTTCACAAGAACGGCGTGCGCGCGTCAGATGTCGTTATCTTGTCACCTTACAGAGAACAGCGAAGTAGAATAAGCGCAGCCTTGCAAGGAGTGTTCAAGTGCAAAGAAATTCCTGTCACAACAATCGCGAAAAGCCAAGGTAACAAGAACCTACTGATACACCATCCCATGTGGCAGAACTTGATAGAATTCTACGAGAAAAATAATTGCTTGGTTGATGAATCTAACTGGCCTAGAAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYK8	3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
E9QAM5	3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q9HEH1	Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7378386.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.