Gene detail

Detailed information of KAJ7379043.1 in Desmophyllum pertusum

Genomic Location: MU826360.1:1272911...1294148
NR annotation: KAJ7379043.1, hypothetical protein OS493_018838 [Desmophyllum pertusum]
Species abbreviation DPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7379043.1

ATGGAGAACGGAAGCGCCATTCTTCGAACTCGAGAAAATGGCGGCGACTCGAGGCAGGAAACTCGTGAATTAGTTGCAGTCGATGTGACCACGATGAACCGACCATCAGTAGATCAAGTCAGGGCTGTAATAAGCGCCTTGTACAACGACTCGAATCCAGGTGGAAAAGAAAAGGCTTCGGAATGGCTTCAAGAACTTCAGCGTTCGGTTTATGCTTGGGAAATAGCAGACCAGCTTTTGAGGCTAAATGTCAATGTAGAAACAAGTTATTTTGCTGCACAAACTATGCGGACAAAGGTTCAATACTACTTTCATGAACTGCAACAAGCACAGTACCAGTCACTTAAAGATTCTCTTCTGGATCATCTTTTCACTCTTCATGGTGTTTCTCATGCAATTGTCACGCAGTTGTGTCTAACTCTTGCTGATCTTGCTGTTCAAATGCCGCAATGGAAAGAGGTTGTCAATGATCTCTCTCAGAGATTTGGCACAACAGTAGAGAGACTACCTGTTCTTCTGGAGATTTTGACGGTTCTTCCAGAGGAGGTTGGAAGTCATCATCTTAGAGTAGGTGCCAACAGAAGAGATGAAGTAATCCATGAGCTGCGAGCCTCGGCTGCTACAGTTCTCAATCTCCTTACAGCTTGTGTGAGCCAGTTTCCAAATGACACAAATGTGAAAGTCAGGATGTTTCGCTGTGCTGGTAGTTGGGTGACCCTTAGTGCATTTCCACCAGTTGAATTTGTACAGAGTGATCTGCTTAAGTCAACATTCAGTACACTGCATGAGGCAAATTCTAGTGATATGTTACATGAAGTAGCCGCAGACTTTGTTTGCAACTCGCTTTATACATCTGAGAACCTCGACAAGCAGCAAAAGCTGGCTGAAGGACTGTTCAAATATGTCATGATATTACCACCAGCCTATGAGAAAGCTGTACATAGTGAGGACTTTGACAGAGCTCTTAACTTGTGCAGAGTTTTCACTGAAATGGGAGAATCATTTCTACCTGTGATTGTTGAGTCACCTGGAAGAGATCTTGGAGACCTAAGAACACTCACCATTATACTGGCTTGTGTCAAGCACTATCAATACGAGGTTGCAGAAGTAACATTCAACTTCTGGTATCGCTTATCAGAGGCTTTGTTCAAGAGTGAAAATGAAGCTAAGACAGCTCTTTTTAGACCGTATTTTGAAAGCCTGTTTGAAGCACTGTGTGTCCACTGCCGGCTAGAATCTGATGCTCAGGGCATCCCAGATGACTGTGATGAGTTTGGGGAGTTTCGTATCAGAGTAGCAGATCTGATCAAGGATTGTGTGTTTATTGTAGGATCAGGAAACTGTTTCAGCCAGATGTACAACAGCCTTATTCAGCAAGGAAACGCAATACCTTGGGAAGCATCAGAAGCCATCTTGTTTGTGATGTCAACAGTTGCAAGGAATGTGCCACTGGATTTTGAAGTAGTTGGTCATTTTCTGCCGGTGGTGTTAAACTTACCATCAAGCTGTCATGTCGCCGTCAGACACACCAGCATTAAACTTGTTGGTGAACTGGCAGAGTGGATAGACAAGCATCCAGAATATCTTGATCCTATCCTTCAATATCTGTTGTCTAATATTCAAGATCCTAAACTGTCGTCAGTCGCGGCATCAGCTATTGAAAGCCTTTGTATTTCATGTTTTACAAAGATGACAAAGTATTTTGAAGTCTTAGCTCAGGTGGTGATTGCAGCCGATTCATTATCCATCTCCCATGATTCTTATATTGGACTCCTGAAAGGAGTGTGTAAGGTTTTAGAAGGAATTCACTCGGATAAACTTTCCGAAGGCTTACATTCTATATGTGGAATACACGTGACATCACTTAAGCAGATTCTATCAGCGCCTGTGAACTCGTATCCAGACCCTACTCTTTGGCTCGACAGACTAGCAGCTACATTTAGATATATCAACCCCAAAGTAGACAATGGCAAGGTACATCCAGCACTTACAGTAGTGGAAGAGGTGTGGCCAATACTATCCAGTATCTGTGATAAATATCGAGCTGAGCTCAAGATTATTGAGAGATGTTGTAGGTGTATTAGATTCGCTATTCGCTGCCTTGGCAAATCCGCCATAAACTTGCTCTCTCCGTTGGTGTCGCAGATGGTGAGTGTATACGGCACCAATCCCCACTCGTGCTTTCTGTACCTGGGCAGTATATTAGTTGATGAGTATGGTAACGATTCTGGATGTGTTCCTGGACTTATTGGCATGACAATGGCTTTCTGTGGGCCAGCATTTCAACTGTTGAGTCGAGAAAAAGGAATGATTGAACATCCTGACACGATAGATGATTTATTTAGGTTATGCAGCAGATGCCTTCAAAAGTGCCCTGTGGCCTTTCTCAAGAGTGAAATTGCCGTCCCTGCTGTCCACTGCGCTGTAGTTGCCAGTACAGTTGAACACAGAGATGCTAACTTATCAGTGATGAAGTTCCTTAAAAGCCTGATCAGTTGTGCCACAGAGAAGTTGCAGAATGATATTCAAGAGAGGCTTTCGTTAGTGCAGAAGATTCTTGCTGCTCATGGTCAAAATATAATCACCGGTCTAATCCAGGCATGCGCAGGAGCCCTTCCATCTTACATGGTGTTGGATGTATCTGAAGTGTTGTGGGAATTCATTACATTCTGTCGAGAGGAGACGTCCAAATGGGTGCAAGTTTCGCTCCAGTCCATTCAAACCCAAAGTGTGCCTGGCGGTGTAATAGCTACTCACCAACAGCTCCAAGAGTTTCATCACGCCTTGATTGGATCTCCAACCCAAGATGCTGTTTGGAAAGCTTCGAAGCGCTTTTCTCGCCTGTTCAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2B1	Transportin-3 OS=Mus musculus OX=10090 GN=Tnpo3 PE=1 SV=1
Q9Y5L0	Transportin-3 OS=Homo sapiens OX=9606 GN=TNPO3 PE=1 SV=3
Q9USZ2	Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC11G11.07 PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15436	TRPO3, MTR10; transportin-3	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.