Gene detail

Detailed information of KAJ7379913.1 in Desmophyllum pertusum

Genomic Location: MU826355.1:1894327...1906056
NR annotation: KAJ7379913.1, hypothetical protein OS493_012673 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7379913.1

ATGGAGGAACATAATAACTATGGAAAATACTTCATTGAAGCTACAAGAGTTATCAAGCAAACTCTTCCTGGTGCTCGTGTCAGTGGAGGTCTTTCCAACTTTTCTTTCTCATTTCGTGGAATGGAGACAATAAGAGAAGCTATGCACAGCGTGTTCCTGTACCACGCTATTAAGGCTGGTTTGGATATGGCCATTGTCGATGCTGGTAATCTCCCACTGTACGATGACATTGAACCTAAATTGCTGCAGTTATGCGAGGATCTACTGTGGAACAGGGATCCAAATACTACAGAAAAAATGCTGCAGTATGCACAAGGACTGGGAAAAGGAGCAAAGAAACAAGTGGTCACAGATGAATGGAGACACGGCAATGTGGAGGAAAGGCTCGAGCATGCCTTAATTAAGGGAATCGACAAATTTGTGGTAGAAGATACTGAAGAAGCGAGACAATGTTTAGAGAGATATCCTCGTCCATTGAATGTGATTGAAGGGCCGCTTATGAAGGGTATGGGCGTGGTTGGAGATTTGTTTGGTGCTGGAAAAATGTTCTTGCCACAGGTGATCAAATCTGCTCGAGTCATGAAGAAAGCTGTGGGTCATCTGATCCCATTCATGGAGAAAGAACGCGCGGAAAGACTGGCCCAGCTGGGAGTTACAGCTGATGCTGAAGATGACCCTGCAAGCCGTTACAATGGAACCATCGTTTTGGCAACGGTCAAAGGAGACGTGCATGATATCGGCAAGAACATTGTGGGAGTTGTGTTAGGATGCAATAACTACAGGGTTATTGATCTTGGCGTAATGACGCCGTGTGAGAAGATTCTACAAACAGCAATGAAGGAAAAAGCAGACATCATTGGTTTGTCAGGACTTATAACGCCATCTTTGGACGAAATGATTCATGTCGCCAGAGAAATGGAACGGCAAGGTCTCAAGATTCCACTGCTTATTGGAGGAGCAACAACTTCAAAGACTCACACAGCTGTGAAGATCGCTCCACGTTATACTGAACCAACTGTCCACGTGTTAGACGCCTCAAAGAGTGTTGTAGTGTGCTCGGCTTTGATAGATGTGGGATCCAAGGATGACTTCGTTGAAGAAGTAAGAGAAGAATACGGAGAGGTCAGAGATGAGCATTACGATTCTTTGAAGGATCGAAAGTACCTATCTCTGGAGAAAGCTCGATTGAAAAATGCCAATTTGGACTGGGTTGACTTCACACCAGTTCGTCCCTCGTTCTTGGGTGTTAAGGTGATTGATGACATGGAGTTAAGCCAACTGTTATCTTACATTGACTGGAAGCCTTTCTTTGATGTGTGGCAGCTCAGAGGAAAATATCCCAACAGGGGGTACCCTAAGATCTTCAAAGACAAAACAGTTGGTAATGAAGCTCATAAATTGTTTGACGATGCCCAGGACATGTTGAAGAAGATCATTGATAGCAAATCACTGCGTGCTACTGGAGTAGTGGCTTTCTTTCCTGCTAACAGTGTTGGTGATGATGTTCACGTGTTTAAGGACGATAACGAACGTAAAGGATCACCACGTGCAGTGTTCTATGGCTTGAGACAACAGGCCCAAAAGGAGCATGGTGTTGAGGACCCATACTATTGTCTGTCAGACTTTGTAGCACCGCTGGACACAAATGTCAAGGACTACATTGGCTGTTTCGCTGTTTCTGTTATGGGGGCTGAGGATATGGCTAAAAAATTTGAAGAAGAACTCGATGACTACAGTGTGATTATGGTGAAAGCACTTGCTGACCGCTTAGCCGAGGCTTTTGCCGAGGAGATTCATGAACGCGTGCGCAAGGACTTGTGGGGCTACTGCAGCGATGAGATACTGGACGCTAAAGACTTGCACAGAATCAAGTACCAGGGTATTCGGCCTGCCCCAGGCTACCCGAGTCAGCCGGATCACACAGAGAAGCAGACCATGTGGGAATTAATGAACTGTGAGAAAACTAACTGGAATCAAGTTAACAGAATCGCTTGCAATGTATCCTGCTGCTTCAGTCTCTGCAGTGTTCTTTGCTCATCCAAAAGCTGTTTACTTCTCAGTGGGGAAAATCTGCGAAGATCAGGTCAAAGATTATGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z2Q4	Methionine synthase OS=Rattus norvegicus OX=10116 GN=Mtr PE=1 SV=1
A6H5Y3	Methionine synthase OS=Mus musculus OX=10090 GN=Mtr PE=1 SV=1
Q4JIJ3	Methionine synthase OS=Bos taurus OX=9913 GN=MTR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02310 all species →	B12-binding	B12 binding domain	Domain	Interproscan
PF02965 all species →	Met_synt_B12	Vitamin B12 dependent methionine synthase, activation domain	Domain	Interproscan
PF02607 all species →	B12-binding_2	B12 binding domain	Domain	Interproscan
PF00809 all species →	Pterin_bind	Pterin binding enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037010 all species →	Homologous_superfamily	Vitamin B12-dependent methionine synthase, activation domain superfamily	Interproscan
IPR011005 all species →	Homologous_superfamily	Dihydropteroate synthase-like superfamily	Interproscan
IPR036724 all species →	Homologous_superfamily	Cobalamin-binding domain superfamily	Interproscan
IPR003759 all species →	Domain	Cobalamin (vitamin B12)-binding module, cap domain	Interproscan
IPR050554 all species →	Family	Methionine Synthase/Corrinoid	Interproscan
IPR004223 all species →	Domain	Vitamin B12-dependent methionine synthase, activation domain	Interproscan
IPR006158 all species →	Domain	Cobalamin (vitamin B12)-binding domain	Interproscan
IPR036594 all species →	Homologous_superfamily	Methionine synthase domain	Interproscan
IPR033706 all species →	Domain	Methionine synthase, B12-binding domain	Interproscan
IPR000489 all species →	Domain	Pterin-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45833 all species →	METHIONINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008705 all species →	Molecular Function	methionine synthase activity	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0031419 all species →	Molecular Function	cobalamin binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046653 all species →	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0050667 all species →	Biological Process	homocysteine metabolic process	Interproscan
GO:0042558 all species →	Biological Process	pteridine-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7379913.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.