Gene detail

Detailed information of KAJ7380269.1 in Desmophyllum pertusum

Genomic Location: MU826354.1:2560501...2606367
NR annotation: KAJ7380269.1, cytoplasmic dynein with WD40 domain [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7380269.1

ATGAAGAAAGGAAATGTTAAGGCCGCGAAGGCGGATAAGAAGCCTGGAGTCACTGCTTCAAATGCAGCTGTTAAATCAGTCAGTAAAACTGCTGCCGTCAAAGCAAAGAAAAAGGAAGATGATGATGCTACACAAATTGGAGATGATTTGGACGAATGGATGCAGCCAAAACAGCTGATCAAGCCAGATGACCAACTGGAATTATCAGAGGCAGAATTGAAGGAAGAGTTTACTAGAATCTTGACTGCTAACAACCCTCATGCCCCTAGCAACATTGTGCGCTACAGCTTCAAGGAAAAGTGTTATAAGCCAACATCTAGTGTGGACCAGCTCGCAATTCATTTTGCACTTGATGGGAATATGCTTCATAAAGACTCAGATGAAGCTAGAAGACAGCGAGCACGGCAAGGACTGGCAGAAGCTAATAGGTCAGGAAGTGCCTTTACAATACGCAGCCATGGTCAATTACCTACTCCAAAGCATGGAGTCTCTGATCATGACGCTAGTGAAGCTGGAGAAGAGGAAGATAAAGAAAACAAGGCAGAGGCAGTAGAGGAAAAAGCAACAGAAGAGATCCGGCCTGACTCATCTGCCTCTGTGGGAGGGAAGGGTGATTCAAAGTTGACAAATCAGTTTAACTTCAGTGAGAGGGCATCACAAACTTACAACAACCCTTACAGGGAACGTGGGACTTCAACTGAACCTCCACCAAGAGCAAACTTCTCAGCCACTGCTAATCAGTGGGAAATTTATGATGCTTATGTCGAGGACCTACAGAAGCAGGAAAAAATGAAAGAGAAGGAAAGCAGGAAGACACAGTCGTTCAAGAAAGACGATGACAAAAAGAAAAAGCTCATGCAAGTTGAAGTACAGGGTGACGATATTTCAAGGATTTCCAAACCGTGTAAGATAGTGGAGAGAATGGTCAACCAAAACACATTCGATGACATTGCACAAGACTTCAAGTACTGGGAGGATGCTGCTGATGAGTTTAAAGACCAGGAGGGAACGCTCTTACCGCTGTGGAAATTCTCCTGCGAGAAATCAAAGAGAATGTCTGTCACTTCCCTCTGCTGGAGTCCCAAGTACCATGACTTGTTTGGAGTTGGACATGGATCATATGACTTCTTGAAGCAAAGTAATGGAATGGTCACCATGTACACTTTAAAGAACCCTACGTTTCCTGAATACATATGTGAGACAGAGAGTGGAGTGATGTGCTTGGATTTTCATCCTGAACATCCTAACTACATTGCAGTTGGTTTTTACGATGGGAGTGTCGGTGTGTACATAGTTGTACAACACGCAAACAAGATCGACCTAATGTATCGATCAACAGCGAAGACTGGCAAACACACAGACCCTGTATGGCAGGTAAAATGGCAAAAAGATGATCTGGACAATAACATGAACTTCTTCTCGGTATCTTCCGATGGCCGAATAACGCAATGGACAATTGTTAAGAGTGAGCTGAGACACACAGACATTATCACCTTGAAGCAGGGGAGCACTACTGAGGGAGAAGGCGACAGCACACAGCTTCCGAGTCTAGGATGTGGCACTGCATTTGATTTTCATAAAACAATGGACTATATGTTTCTTGTTGGCACAGAAGAAGGGAAGATCCACAAGTGTTCCAAAACATATTCAAGCCAGTTTCTCGAAACTTACGATGCGCATCACATGGCGGTTTACTCTGTCAAATGGAATCACTTTCACCCCAAGATCTTCATCTCGTGTAGTGCAGATTGGACGGTGAAGATTTGGGATCACCACTACCTTGAGCCCATGTTTACGTTTGATCTGAACAACTCAGTTGGTGATGTGGCCTGGGCGCCATACGCTTCTACAGTGTTTGCAGCTTGTACGACAGATGGTCGGGTGTATGTGTATGATCTGAATGTAAACAAAGTACGAGCCGTTATGCGAACAATCAGGAAAATAAATCGCTCGTTTAGCCGCGGCTTTTGCGAGTGGCAGCGGTGCGTTCAATGCAACATTTACAACTTACCTTTCTTCAATCTGGAGACCGTTTCTGGAGTAAGGATGCATCGTCAGTCAATTGCAGAAGAAGTCATAAAACCAAAAGTGGCTAACAAGAAAAGAACGAAGCTTACTCATCTGTCTTTCAATCCTGAGTACCCGGTGCTTGTTGTTGGAGACGATAGGGGCCACGTGACGTCTTTGAAGCTATCACCAAATCTTAGAAAAGCAACGCAGCCCAAGGAGGACATTCCTATTCTTGTACTCACGCAAGCCGCGGATTCTGACGAAGAACCATTATCACCGCCTCCGATTGTCTTCTCTCCCGAGAAAGCCAAGGGACCCGAAAACGAAATGGCAAAAATGGAGAAGTTGTTGAGTCTTGTCAGAGAACCGTCGGCTAAAATTGAATGCCCTGATATTCCACATGACAAGAGAAGGAAAAAATATTTCTTACATACACGTCGGAAACGGAAAGGATCAGTAAATTTCCGTAACTATGGTCAAGATATCGACCTGGTAACTTCAAACCGACGGTACGAAGTTGTCCATGATGGTGTCAACTTTGCAGGCATAATGACAAGTAATTTGACTCTGTACGAGTGTCTTCAACAAGTCTCGTTGGAGAGGTACCATGGAAGGTTTGCACAGCGTGGTATTGTGGATGTTGGAGGGTTGCTGTCGCTTACAATGCAAGATTATCCCGCCTTGGGTATTTCATCAATGGCGGACCGGCAGAATTTGTTTTACTTGATTCAGACGATAAAGACAATGCAGGGCTCACAGTCTAACGAAAGACAATTGCGCAGTGGAGCGACGAAGGATGGTTTGTTACATCTGGAGGGTTCAGCAGTGAAGGGAAAAGGTGCAAAGAGGCCACGGGAAACCACAGAGAACAGTCCAGTGGCTGTCAAGATGAAGTCAAAGACACAGGAGAAGACTCCAGGAACTACAAGGCTGTCTTCTATCTCAAGATCAGCAGAGTCTGTAAACACAGTGGGATTTTACAACTATGGTGTTCCTAGTAACAAGCCTAAACAGTCACCAATCAAAAGGCACCAGCATTCAACATCTGAAGTTGGTCCATCGCGAATTAAAGTGTGTGTCCGTAAACGACCGCTGAGCCAGGCTGAAGTGAATGGCAATGAAGAAGATGTTGTCGCAGTTACTTCGAGCAATACTATTGAACTTACAGCTCCAAAACTTGCCGTGGACCTAACAAAATATACTCAAAAGTATCAGTTTGTGTTTGATGAAGCCTTTGATGAAGGTTGCAGTAATAAAGAAATATATGAGAAAACTGCACAACCACTTATCCAGACTGTATTTAACAGGGGTAAGGCTACATGTTTTGCCTATGGGTGTACTGGAAGTGGAAAGACGTTCACAATGCTCGGAAATGAGGATGTACAAGGGATCTATGTGCTTGCAGCCAGTGAAATATTCACTATCTTACATAATGGAACACACGGTGATGGCCTTGGTCTATGGCTCAGCTTCTACGAGATTTACTGTGGACAGCTGTTTGACCTCTTGAACGGGAGAGCAAGGTTATTTGCCAGGGAGGATGGTAACCACCAAGTCTGCATTGCTGGGTTAACTGAGCAGCATGTTATAGAATATGGTGGTAGTGTAAGGAGCACTGGTGCTACAGGTGTGAATGCTGATTCATCACGATCACACGCAATCTTACAATTGGACGTGAAAGTTGTTAACACTGAGATCATATTGGAAGATCATAATCTTGTGCTGTTGATTTATGACAGATTTTCATTCATTGACCTGGCTGGATGTGAACGTGCCGCAGATGTGACTGACACAGACAAGCAGACGCGTGTGGAAGGAGCTGAAATTAACCAGAGTCTATTAGCTGTTTTGAAGGATTCATTTGTTGGAAACTGTCAAACGTGCATGATAGCCAATATTTCACCCAATAAATCCTGCAGCGAAAACACCCTCAACACACTGCGATATGCTGACAGGGTGAAAGAGTTGAAAAAGGACACCCCAGTAACAGCCTCCCCTCGACCACTGACTGTCCCGACAACCATTGCTGAGACAGACAGGTTATTATCTGTTCATAAGCCCAGTGGATTACCCAGAATGGAAATACAGCCTATTAAGGCTAGTAATGCCTTGGGTCAACTGAGAAGCTCCCCAAGAAAGCTCAAAATGGCAGACATTGAATCGAATGATGGCACAAGACCCAAGACATCAGCTACAACAACATCATCTCCTAGAATTAAAGAATCTATAACAAGGAGCCACATAGGAAATACCACTGGAAATATAAATGCTACTAGTGGTAGTACTGGTACTGTAAATGCAAAGAAAAGACTAGCAGTACATGTACCACCACAAGTGTTGCGGCCTCAGACTTCCCCTGATGTAGTCACAGTAAAAAATCGTGTAGCAACAAATAGAACGCAATGTAGGCTGAGGAATTCCAATTCAAAACGAAAAGCTGGCAATGTCGCACAGATAAATTCTAACTTTTTAACTGAAACTATACAAGAAAAATCTGAAGAAAAACCCCCGAAAGTTGTTTCAGAAAGCTGGCGAAGAACATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16959	Dynein intermediate chain 2, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Q32KS2	Dynein axonemal intermediate chain 1 OS=Bos taurus OX=9913 GN=DNAI1 PE=2 SV=1
Q8C0M8	Dynein axonemal intermediate chain 1 OS=Mus musculus OX=10090 GN=Dnai1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003618 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47971 all species →	KINESIN-RELATED PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7380269.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.