Detailed information of KAJ7381326.1 in Desmophyllum pertusum

Genomic Location: MU826350.1:1747601...1761959
NR annotation: KAJ7381326.1, hypothetical protein OS493_001449 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P32232Cystathionine beta-synthase OS=Rattus norvegicus OX=10116 GN=Cbs PE=1 SV=3
Q58H57Cystathionine beta-synthase OS=Macaca fascicularis OX=9541 GN=CBS PE=2 SV=3
P35520Cystathionine beta-synthase OS=Homo sapiens OX=9606 GN=CBS PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004723 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291
all species →
PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036052
all species →
Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR050214
all species →
FamilyCysteine Synthase/Cystathionine Beta-SynthaseInterproscan
IPR001216
all species →
Binding_siteCysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment siteInterproscan
IPR001926
all species →
DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR005857
all species →
FamilyCystathionine beta-synthaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10314
all species →
CYSTATHIONINE BETA-SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004122
all species →
Molecular Functioncystathionine beta-synthase activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0006535
all species →
Biological Processcysteine biosynthetic process from serineInterproscan
GO:0019344
all species →
Biological Processcysteine biosynthetic processInterproscan
GO:0019343
all species →
Biological Processcysteine biosynthetic process via cystathionineInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for KAJ7381326.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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