Gene detail

Detailed information of KAJ7384240.1 in Desmophyllum pertusum

Genomic Location: MU825889.1:366425...425837
NR annotation: KAJ7384240.1, Sortilin- receptor [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7384240.1

ATGAGTATGACTACAAACAGTGGGATACCATCAGATAAACAGAACGGGACTTGCTTGTTAGGAAGGAAGACTATTTACAAGAGGCGGATTGCTCATGCACACTGTTACAATGGTTATGACTATGATCGTCCAATCATGCAACATAATTGCCCATGCGATAGAGAGGACTTTGAATGTGATATGGGATACCGGGATACAGATTATAATGAGTGCGCATTTGATACGTCCAGTGGTTTGACTCCTACAAGTGTACCTTCCTTCTGTCCTGTAGGCAGCACATACCGCCGCACTAAAGGATATCGCAAGGTTGCTGGTGATACCTGCCAGGGAGGCATGAAAGATCAGTTTTGCTGCAGAAACAGTTTCTTGTCCGATACATTAATCACACTAGGGGATCATATAGAAACTACCATTCCACTTGGAAGTGGGCTGCAAAATGCCATCGCATTAGACTATGATTACAAACAAAATTGCATCTACTGGGCTGACATCACTCTGGACACCATCAAGCGCACATTTCTTAATGGATCTGAAATTGAAACACTCCATGGTGGCATCCAGCAGGTGGAAGGCCTGGCACTAGATTGGCTCGGCGATAACATATATTGGGTAGATGCTGCCGCCAAGAAGATAGAAGTCTCTAGGGCAGATGGGCGTTTCCGCAAAACCCTTTTCACCAATCTTGATCGCCCCAGGGCTATTGTTCTGGATCCCAAACGTGGTTACATGTACTGGACTGACTGGGACACCAATGCACGAATAGAGAGGTCATACATGTCTGGCACAGGACGTGCAGTAATCATATCAACTAATCTACGGTGGCCCAATGGCATTGCCATTGATTTTCCTGCACAAAAGTTGTACTGGACTGATGCCGGTTTGGACAAAATAGAGAGGAGTAACTTGGATGGAAGTTATCGACAGACAATAAGCAGCACAGGGCTGCCTCACCCGTATTCAATATCTGTTTACAAAGATTCCATCTACTGGGGTGACTGGACAACACAGTCCATCCAAAAGGCAAACAAACGAGATGCTGGTGCTCGACAGACTATCAGGTCACATGTACGTGGGCTAATGGATCTAAAAGTTTTCCATCAAGATGCCCAGACAGGTGACAACTCCTGCTCTCGGCTGAAACAATGCACTCACATCTGCTTAGCTGTGCCAAATAGCTATACCTGTGCTTGTCCTGATAACATGCGAACTGTGACAACTGCTTCTGGAATTGTGAGCTGCGAGTGCCAGCCTGGGGAATACATGGACCCAAATGGAGAATGTAAAACTCGGAGTGAGTACTTAACTGTGATCGCAACAGCACCTATAACACCTGCAGCCCAACACAGTTCAGATGTGACAATGGTCGCTGTATATCTGCATCATGGAAGTGTGGATCATGACGACGACTGCCATGACATGTCTGATGAGAGAAACTGCACCTTTCCAACTTGTCAGTTGGGCCAATTTACTTGCGCTAACAGTCGCTGTATTCCACAACGCTGGGTTTGTGATTTTGACAATGACTGCCGTGATGGCTCTGATGAGCAAGGATGCACTCCAGCCCCAACTATATCACCACCACCAGCAGACTGTTCATCCACTCAATTTGCTTGCCACAATGATCATTGCATTCCAAGTTCTTGGTACTGTGATGGGGACCAGGACTGTGGTGACGGATCTGATGAGCCATCCAATAATTATTGCATCTCTACAAGAAAATGCTCCCCATCGCAGTTCACTTGTCAAAACAGACGCTGTATCCCAAGTTCATGGCATTGTGATGGTGACAATGACTGTTTGGATAACTCAGATGAACAACACTGTACATATACAACTCCGATTACTGCTTCCACGGCGACACCATGGACCCGCCCTACAAGCTGTAAAGCGTATGAATATAGATGCCATAATGGCTTCTGTATTTACCAGTGGGATGTATGTGATGGTGTTGATGACTGTGGCGACAACTCAGATGAGTGGTATTGTGCTACGACACCAACCCCGGCTCATAATGCCACCACACCATTTACCAGGCCTTGCCACTACTGGGAATTCACTTGCCCCAATGGCTGGTGTATCAACAGTGGATACAGGTGCAATGGGCGGGACGATTGTGGAGACGGAAGTGATGAGAGCGGATGCTCTTATCTTACAGCAACAGCAAGGCTCACTACTACATCGAATCCATTGTGCCCGGCTGGGTGGCTCCATTGCGGGGACACTAGCTATGTCATCTGCATAAGAACGGAATGGTTGTGTGATGGGGTAGATAACTGTCCTGGAGGCTGGGATGAAAGACCACAGAATTGCCCAAAAAGCACAAGAAGACCTATTACTTGTTCAAGCAGTGAGTACCAGTGTACAGATGGAACTTGTGTACCACTGAGGTACCAATGCGATGGAATCAGACAATGTATTGATGGCTCAGACGAGGTTGGCTGTGGTGGCGGTACTCCAAGCACTTGCCCAGACTTTTTGTGTGATTCCAAAACTGTTTGCTTGCCACTCGCACGAAGATGTGACCATATGCCAGACTGCAAAGATGGCACTGATGAAAAGAATTGCAGGCTGTTAGTCTGCACTCTGTTATCTGTGTCAGATAATTGGCATCAGGAGGACACACAACACAACAATTTTTACATTGTTTCCTATCTGCAGCCATGCTCAAAATACGAATTCGGGGTACAAGTCCTTTTAAGTGGATCTGCACCAGGACCATTATCAACTACCATCAAAACAACAACTCTAACAGCCAAAACAAGTGCTCCTCGAAATGTGCTACATGTATTGAAAGGTGATGGTTCACTACAGATAACTTGGGACGTTCCATTAACTACCTGCCATGTGGTCACTAATTATAAAATCTTTTACAAGCAAATTACTCGCATTGGATTTCAAATAATAGAGACTGGTAATGTTCAAGTATACCGTATAACAGGGCTTGCAGGAGGTGTAACATATGAAATCAAGCTGCAAGCCTTCAGTGTTGATGGTGGTGGTGACTTGTCGAATGTTCAGTATGTGCGGATTCCAATTATACCGACACATCCAACAGCACCAGTGCCAAATCCTCATTATACATCTGTCAATGCAACAACAGTGGTTCTTGCTTGGGGAACTCCTACACAGACTGGTGTCATGGTGCCTGTTTTGGGCTATAAAGTGTATGAAACAATGAGCGGTGGCCTGGTGCTCCTTATCATTACTGATAAGCATAACTACACTGTTTATTCGTTGCTCCCACGAACATCATACTCTTTCACAGTGAAACCTTACAATCAGATAGGTGATGGTCCACCTGCTTTTATTGCAGTAACAACTACAGGAGGAAGTGCTCCTCAAAGTGTAATTGCAACTCCACTTAACAGCACAGCCATAACACTAACTTGGTCACCACCAAAGCATGGCCAGTCAGGTGAACCGATGTACTACATCTACTATGGAACCTTAACAAGCGGAGTCAGTACTCGGCCTGTGGGTCATACTGCAGCTACAACATTCGTGGTGGGCCACTTGCAGCAGGACTTTGTTTATGTGTTTGAGGTGTCCTTGGGTTTGACAGGGCAGCACAGCGATCCAGTTAATTCCAAGCCAAAATCTGATGCTGATTACCAGCCGGTACACAGTCTGAAGGCTGTCGTTGTTAATTCCAGTAGTATTGTTCTGACTTGGCAAAAACCAATAGACGTAACCCTCAATGATATCAAAAACTACCAGATTAAGATGTCATTGATGGATCAGACTTTCACTAAAACCACTAAAGGCAAGGAAACTACCTACACATTTAGATACCTCCATTTTAATGCCAGCTACACTTTTGAGGTGAGGACAATATTTGTCAAACGGGACCTTGGTAAGGATGTCAGTATTGTCAAAACGACAGGCCCGTTCTCAGCTTCTGTGGGACCGTTGAGGAAAACAATAGAGGACAACACTGTTGTGCTGTCTTGGTCTGCACCGCGGACAATTTCTTCGACGGATTTGAAGCACTACAAAGTCTTTTCAACATGTCCTGGATGTTACAACAAGCTTACTCCACAGTTAACTGATAAAACGACTATAAAGTTTCCGAACTTGCAGCGAGGCCAAACATATACATTCTCCGTCCAAGCAGGAACCGCATATGGTGCTGCACAGAACTCCACCACGTCAGCCACAATAAATCTCTTCTTCGGCCAAGTTGGTAATTTGAGACAGTCAATTTTGAATAAGACGGTGACGCTTCAGTGGGATGCTCCAACTGATGTGGACGCCAAACATATTAAGGTACCTTCTGTCGTTCCTAAGGGAAAACAGGCAAATATCAAGGTCACTGTACCACCCCTCGATCTAAAAGTGAGGTATGCCGGTGGATCCCCAGGTGGCAAGTATGGATTGACAGTAAACTTGTACTGGGCAAGGATTTACGACAGGAACGTGCAATACGAAGTGAGATGGCATTGTATCAGAGGCCATGGTTACTGTTATTGGTATGATGGGTATCCCTGGAGCATGACGACTGTGAACACAACGTCTGTAGCTCTGAACATGACCCACTATGGTGTAGCATACTTGTACGAAGTGCGAGTGGTGACATCCCAAGGCAGAGGAGAGCCCTATCAAGTGTATGTCTATGTTCCTCAATTCAATGGAATGCCTAAGAGGTTTACTTGCACCGCCGCATCATCTCACTCTCTTGTGTGTCACTGGCTACCACCCACTGATTTTAATCCATCTGGATTTTATCACTACAGCCTGAAGTATAAGTGTGATGACTGCCTCGTTAGTTCCATGCGATACAAATCAGTATATGGGTTCAATCAAACCTCGGTAAACATATCTGTAAACAGTGGAGCGCGCTTCACGGTGTGGATCCAGGTGCATACAAGATATGGATTTGGAAAATGGGTTCAAACAACGGCAACTACGCAGTCTTCATTGGGAGCAGTTAGAGCGTTGGCTGCTATATTAGACGATAAAGACCATACTCTTGTTCACTTGTCTTGGCTACCTCCATCCTATAGTAGTGGTGTTCTGGTAAGCAACTTTGTCTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
Q98930	Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1
Q95209	Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051221 all species →	Family	Low-density lipoprotein receptor-related	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0042562 all species →	Molecular Function	hormone binding	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7384240.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.